| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5468 |
|---|
| Symbol | |
|---|
| ID | 7975162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 169202 |
|---|
| End bp | 170809 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644796055 |
|---|
| Product | protein of unknown function DUF894 DitE |
|---|
| Protein accession | YP_002947329 |
|---|
| Protein GI | 239820144 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.685954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATC TCGCAGATGC CGCAGAGGCC GCCCAGGCCG CGAAGCCGAG CAGCAGCTTT
GCGCCGCTGC GCCAGCCGGT CTTTGCCGTG CTGTGGGCGG CCACCGTGCT CGGCAACATC
GGCAGCTTCA TGCGCGACGT GGCGAGCTCC TGGCTCGTGA CCGACCTGTC GGCCAGCCCC
ACGGCGGTGG CGCTGATCCA GACCGCGGCC ACGCTGCCGA TCTTCCTGCT CGCGATTCCG
GCCGGGGTGC TGTCCGACAT CCTCGACCGG CGGCGCTTCC TGATCTTCGT GCAGCTGGTG
CTGGCGGGCG TGAGCGGCAC GCTGCTGGTG CTCTCGCACA CCGGCGCGCT CACCGTCGAG
TACCTGATCG CGCTGACCTT CGTCGGCGGC ATCGGCGCCG CGCTCATGGG GCCGACCTGG
CAGTCGATCG TGCCCGAGCT GGTGCCGCGC GCCGACCTCA AGAACGCGGT GGCGCTGAAC
TCGCTGGGCA TCAATATTGC GCGCTCCATC GGGCCGGCCG CGGGCGGCCT GATCCTCGCG
AGCTTCGGCG CCGCCCTGAC CTATGGCGCC GACGTGCTCA GCTATGTGTT CGTGATCGCG
GCGCTGCTGT GGTGGAAGCG CCCGGCGGCC GCCGACAGCG GCCTGTCGGA GAACTTCCTG
GGCGCCTTCC GCGCCGGCCT GCGCTACACG CGCGCCAGCC GCGAGCTGCA CCGTGTGCTG
CTGCGCGCGG CGGTGTTCTT CCTGTTCGCC AGTTCGGTGT GGGCGCTGCT GCCGCTGGTG
GCGCGACAGA TGCTGGGCGG CAGCGCCGGC TTCTACGGCA TCCTGCTGGG CGCCGTGGGT
GCGGGCGCCA TCGGCGGCGC GCTGGTGATG CCGCGGCTGC GCGCGCGCTT CAATGCCGAC
GGCATGCTGC TGCTGGCCTC GCTGCTCACC GCCGGCGTGA TGGGCAGCCT GGTGTTCGCG
CCGCCGCAGT GGCTCGCAGT GCTGTTGCTG CTGGTGCTGG GCCTGGGCTG GATCATCGCG
CTCACCACGC TCAACGGCGT GGCGCAGTCG ATCCTGCCGA ACTGGGTGCG CGGGCGCGGC
CTGGCCGTGT ACCTCACGGT GTTCAACGGC GCAATGGCGG CCGGCAGCCT GGGCTGGGGC
CTGGTGGCGC AGGAGATCGG CGTGCCGTAC ACGCTGGTGG CGGGCGCCGC CGGGCTGGTG
GTCGTGGCCC TGCTGTTCCA CCGTGCACGC CTGCCCACCG GCGATTCGGA CCTGCAGGCC
TCGAACCACT GGCCCGAGCC ACTGGTGGCC GAGCCTGTCG CGCACGACCG CGGTCCCGTG
ATGGTGCAGG TCGAGTACCG CATCCGCAAG GAAGACCGCC CGGCGTTCCT GGACGCGATG
AAGCGGCTGT CGCTCGAGCG CCGCCGCGAC GGCGCCTACG CATGGGGCGT GACCGAGCAC
ACCAGCGACC CCGAGCGCGT GATGGAGTGG TTCCTGGTCG AGTCCTGGGC CGAGCACCTG
CGCCAGCACC ACCGCGTGTC GCATGCCGAC GCCGACCTGC AGAACGAAGC CGTGCGCTTT
CACATCGGGC CCGGCCGGCC CGAGGTGCAC CACTTCCTGT CGCTCTGA
|
|---|
| Protein sequence | MADLADAAEA AQAAKPSSSF APLRQPVFAV LWAATVLGNI GSFMRDVASS WLVTDLSASP
TAVALIQTAA TLPIFLLAIP AGVLSDILDR RRFLIFVQLV LAGVSGTLLV LSHTGALTVE
YLIALTFVGG IGAALMGPTW QSIVPELVPR ADLKNAVALN SLGINIARSI GPAAGGLILA
SFGAALTYGA DVLSYVFVIA ALLWWKRPAA ADSGLSENFL GAFRAGLRYT RASRELHRVL
LRAAVFFLFA SSVWALLPLV ARQMLGGSAG FYGILLGAVG AGAIGGALVM PRLRARFNAD
GMLLLASLLT AGVMGSLVFA PPQWLAVLLL LVLGLGWIIA LTTLNGVAQS ILPNWVRGRG
LAVYLTVFNG AMAAGSLGWG LVAQEIGVPY TLVAGAAGLV VVALLFHRAR LPTGDSDLQA
SNHWPEPLVA EPVAHDRGPV MVQVEYRIRK EDRPAFLDAM KRLSLERRRD GAYAWGVTEH
TSDPERVMEW FLVESWAEHL RQHHRVSHAD ADLQNEAVRF HIGPGRPEVH HFLSL
|
|---|
| |