| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5458 |
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| Symbol | |
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| ID | 7975152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 160325 |
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| End bp | 160843 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796046 |
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| Product | Transthyretin |
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| Protein accession | YP_002947320 |
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| Protein GI | 239820135 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2351] Transthyretin-like protein |
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| TIGRFAM ID | [TIGR02962] hydroxyisourate hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.735807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAATC AAGTCGTATC CCATCCCGCG CGCAGGCAGT TCGCGCTCTC GGGCCTGGCC
CTGGGCGCGG CGGCGATCGC GTCGCGCGGG GCGCTGGCGC AACAGCCGAA TGCCGCGCCG
GCCGGCCCTG CCCGGGCCAG CGGTCCCATC GTGCTGCACG GCGTGAGCCC GCGCCTGACG
GTGCACGCGC TGGACACCTT CCACGGCGCG GCCGCCACCG GCCTGCGCAT CGACTTCTCC
CGCCTGGAAG GTGGCAGCTA CAAGCTGCTG CGCAGTACCG TCATGAACGC CAACGGCCGC
TCCGACGATC CGCTGCTGGT CGGCGAGAGC TACCAGGCGG GCGACTACGA GCTGCTGCTG
CACGTGGACG ACTACTTTGC CGGCAGGAAG GCCGTGCTGC CCGTGCCGCC TTTCCTGACG
AAGCTGCCGG TGCGCATCCG CGTCGCCAAC GTTGCCGAGC GCATCCACCT GCCGATCCAG
TTCGGCCCCT GGAGCTACAC CTATTCGCGC GGAAGCTGA
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| Protein sequence | MANQVVSHPA RRQFALSGLA LGAAAIASRG ALAQQPNAAP AGPARASGPI VLHGVSPRLT
VHALDTFHGA AATGLRIDFS RLEGGSYKLL RSTVMNANGR SDDPLLVGES YQAGDYELLL
HVDDYFAGRK AVLPVPPFLT KLPVRIRVAN VAERIHLPIQ FGPWSYTYSR GS
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