| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5449 |
|---|
| Symbol | |
|---|
| ID | 7975143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 152710 |
|---|
| End bp | 154338 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644796037 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002947311 |
|---|
| Protein GI | 239820126 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.116317 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGTC TACGGTTGTC GTTCGCCTTT GCGGTTCTTG TTGCACTGGT GTGCTGCCAG
GCCGCCTTTG TCTACTGGGG CTCCAATCGC GTCAACGAAT ACGCCGCACA CAGCCGGCTG
ACGAGCGACA TTCTTTCCGA GCTCCTCGAG ATTTCAGCCA ACAAGCAAAG GCTGCGCGTG
TGGGCCTCGC AGCGGCTCAT GAATGCGGAG GCGACCTCGG CGGTGCGGGA CCAGCTGCTC
GAGCGGATGC GGACCGGCGC TGCGCGGCTG GACGCCATGT CCCGCCTGCA CCTGGACTCG
TGGCGGAAGC TGTCCTCGCG GGAGGACATC GCCGTGCCGC AAGAGGTTCT CCAGCTGGTC
GAGATCAGCA AGCTGCTGGA CGGCAACATC CTCGAGGTGC AGGCGCAGCT TCAGGACTTG
CAGCCGCTGT CGCCCGGCGC GGAATTCCCG AATGTCTGGC GGCAGGTGGC GCAGGTCTTC
GACATGACCC AGGGCCGCGA CCTTCGCGAG CTGCTCAACG GTGCCATCGA AGGACAGCGC
AAGGCGGTTC CCATTGCCCG TGCCGCAACC GAGCGGGGCC TGGACCGGCT GCGGCAGCAG
GCGATTGCGA TGGCGATCAT CGCCCTTGTC GCAGCGGTGC TGTGGGCGCT GCATCTGCGC
GGTCGCCTCA AGCGCCCCCT GGAGCTGCTG CTGCAAGGCA CGCGGGCCCT GCAGTCCGGT
TCGCTCGAGC ACCGCATCGA CCTTGCATCG GGCGACGAAT TCGAAGTGGT GGCGCGCCAT
TTCAACCAGA TGGCCGCGGA ACTTCAGCAG CATCGCCAGC AGGCCGACGA AGCCCGCCGG
CGCCTGGAAG ACGCGGTCCA GGACCGGACG CGGGAATTGC AGTCGGCGCA CGACACGCTC
CAGCTCCTGG ACCATCGGCG GCGGCAGCTC TTCGTCGACC TCAGCCATGA GCTGCGGACA
CCGGCGACGG CGATTCGCGG AGAGGCGGAG ATCACGCTTC GCGGCGGCGA CAAGCCGGCC
GAGGAGTACC GCCATGCCCT GAAACGCATC GTCGGCACCG TTCAGCAGTT GACCAAGGTG
ATTGGCGATC TGCTCCTGAT CGCGCGGGCC GAAGCCGACC AGCTGGTGAT CCAGCCGTCC
CCCTTGGATC TCTCGATGCT GCTGAGCGAG GTCGTGGAAC AGGGCGAGGC CCTGGCGGCG
CTGCATGGGG CCGCGCTGAC CTGCGAGCCC GTGGTGGAAA CGGTCATGGT TCGCGCAGAC
GGCGACCGGC TGCGCCAGGC GGTGATGATC GTCTTGGACA ACGCCATCCG CTATTCCCGT
CCGGACGGCA AGGTGCGTCT GGGCTGCCAC GTTGCCGCAG ACGAAGTCGC CATCGTGGTC
CGCGACCACG GCATCGGCAT CGGCGAAGAC GAGTTGCCCC GGGTGTTCGA GCGCTTCGTC
CGCGGCCAGC GGGCACGCGC GCACCGGGCG GATGGCAGCG GCATCGGCCT TTCCATCGCG
CAGGCCATCG TCAAGGCTCA TCGCGGGCAC ATCGAGATCC AGAGCTGGCC CGAGGAAGGG
ACTGAAGTTC GCATCGTTCT TGCACGCCTG CCGATCCACG AATTCGAGGC CAGTGCCCTG
CAGCCATGA
|
|---|
| Protein sequence | MFRLRLSFAF AVLVALVCCQ AAFVYWGSNR VNEYAAHSRL TSDILSELLE ISANKQRLRV
WASQRLMNAE ATSAVRDQLL ERMRTGAARL DAMSRLHLDS WRKLSSREDI AVPQEVLQLV
EISKLLDGNI LEVQAQLQDL QPLSPGAEFP NVWRQVAQVF DMTQGRDLRE LLNGAIEGQR
KAVPIARAAT ERGLDRLRQQ AIAMAIIALV AAVLWALHLR GRLKRPLELL LQGTRALQSG
SLEHRIDLAS GDEFEVVARH FNQMAAELQQ HRQQADEARR RLEDAVQDRT RELQSAHDTL
QLLDHRRRQL FVDLSHELRT PATAIRGEAE ITLRGGDKPA EEYRHALKRI VGTVQQLTKV
IGDLLLIARA EADQLVIQPS PLDLSMLLSE VVEQGEALAA LHGAALTCEP VVETVMVRAD
GDRLRQAVMI VLDNAIRYSR PDGKVRLGCH VAADEVAIVV RDHGIGIGED ELPRVFERFV
RGQRARAHRA DGSGIGLSIA QAIVKAHRGH IEIQSWPEEG TEVRIVLARL PIHEFEASAL
QP
|
|---|
| |