| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5446 |
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| Symbol | |
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| ID | 7975140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 150124 |
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| End bp | 151371 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796034 |
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| Product | SMP-30/Gluconolaconase/LRE domain protein |
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| Protein accession | YP_002947308 |
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| Protein GI | 239820123 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3386] Gluconolactonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.259337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGTGGG TTGTGGCACA GGAAAAAATC GATTTCGTAG TGAATAGTTC GGTACTACGC
CGCCGGCTTC TTCGCGGCGT GGGCGCCGCG GTAGGCGCCT CCATCGTCCT GCCGCGATGG
GCGCATGCAC AGGCCGCCGC GGGCGGACCG GCGGCGCCGC CGAGCACCAT CACCCAGCCG
CCGCGCGACT TCAGTGCGCG CGGGGCTCCC ACCACCTACT TCACCGATCC CGACGTGCTC
ACCGTCGATC CGGTGTTCGA TGGCCTGCGC CAGCCCAACG CCTCGATCCA GCGGCTGTGG
ACCGGCGCGT TGTGGTCCGA AGGACCGGCA TGGAATTCGG TCGGCCGCTT TCTGGTCTGG
AGCGACATCC CGAACAATTG CCAACTGCGA TGGAGCGAGG ACGACGGCCA CGTCAGCGTT
TTCCGCTCGC CGTCCAACAA CAGCAACGGC AACTCCTTCG ACCACCAGGG AAGGCAGCTG
TCCTGCGAGC ATCTGACGCG GCGCGTGGTG CGCTACGAGC TCGACGGCTC GGTGACCGTC
CTCGCGTCGA GCTTCAACGG CAAGCGGCTC AATTCGCCCA ACGACGTCGT CCCGCATCCC
GACGGCAGCT ACTGGTTCAC CGACCCGCCC TACGGCGCCC AGCTCTACGA GGGCACGGTC
GATGCCGCGG GCGGACCCGC GAACAAGGCC GGCCGGCTGA ACCCCAGGCT CGGGCAGCCG
CCGGAGATCG GCTTCTACAA GCGCGAACTG CCGACTGCGG TCTACCGCCT CGACAAGAGC
GGAACGCTCA CGCAGGTCGC CGGCGAAGAC CTGGTGCCGG ACCCGAACGG CCTGTGCTTC
TCGCCCGACT TCAAGAAGCT CTATGTCGTC AGCACCGGGC AGGGGCCGGG CGACACCGTC
GCCGGCGGCA AGGGCGACAT GTACGTGTTC GACGTCGGTA CCGACAACAA GCTCCACAAC
GGCAAGCTCT TTGGCAACTT CACGATCGAT GGCGTGAAGT GCGGCCCCGA CGGCGTGCGT
GCCGACGTCG ACGGCAACCT CTGGTGCTCC AGCAACGCCG GCCGCAGCGT GGGCTACAAC
GGCGTCACGG TATGGACGCC GCAAGGCCGG CTGATCGGTC GCATCCGGCT GCCGGAGGTC
TGCGGCAACA TCTGCTTCGG TGGTCCCAAG CGCAACCGCC TGTTCATGGC GGCCAGCCAG
TCGTTGTATG CCGTCTATAC GGCGACCCAG GGCGCGGCGC CGGCTTAG
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| Protein sequence | MEWVVAQEKI DFVVNSSVLR RRLLRGVGAA VGASIVLPRW AHAQAAAGGP AAPPSTITQP
PRDFSARGAP TTYFTDPDVL TVDPVFDGLR QPNASIQRLW TGALWSEGPA WNSVGRFLVW
SDIPNNCQLR WSEDDGHVSV FRSPSNNSNG NSFDHQGRQL SCEHLTRRVV RYELDGSVTV
LASSFNGKRL NSPNDVVPHP DGSYWFTDPP YGAQLYEGTV DAAGGPANKA GRLNPRLGQP
PEIGFYKREL PTAVYRLDKS GTLTQVAGED LVPDPNGLCF SPDFKKLYVV STGQGPGDTV
AGGKGDMYVF DVGTDNKLHN GKLFGNFTID GVKCGPDGVR ADVDGNLWCS SNAGRSVGYN
GVTVWTPQGR LIGRIRLPEV CGNICFGGPK RNRLFMAASQ SLYAVYTATQ GAAPA
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