Gene Vapar_5443 details

Gene Information

• Locus tag: Vapar_5443
• ID: 7975137
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 145582
• End bp: 147459
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644796031
• Product: X-Pro dipeptidyl-peptidase domain protein
• Protein accession: YP_002947305
• Protein GI: 239820120
• COG category: [R] General function prediction only
• COG ID: [COG2936] Predicted acyl esterases
• TIGRFAM ID: [TIGR00976] putative hydrolase, CocE/NonD family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAGC TCATCGCCGC CGCCATCACA CTCGCCACGG CGTTCGTCAC GTCGCTCGCG 
GCACATGGGC AGGATGCCCC GCTGGATCCC GACACGGGCC TGCCGTTGTC GCCGCCTTTC 
GATTTCCCCG AGCGGGGACC GGCCGCACCA TTCTGGGCGA AGCGCCTCAC CGGTTACTTC 
AAGACATCCG ACGGAATCAG GCTGCGCTAC AGCGTGCTCC TGCCGAAGGC ATCGGGCAGG 
TTCCCCGTCA TCTTGAGCAT CAACGGGTAC GACGCCGGCT CGATCGGAGG AACGCCCTAT 
CTCCAGTACA AGACATCGAT GTCCATCGAA CTCGACAGGC GGCTTGTCGA CGCCGGCTAT 
GCGGTGATGG GCGTCAACGC CGCGGGCAGC GGATGCTCCG CAGGCCCGCT GGAGTACACG 
CGGCCACAGC TCGGAAGACA CGGCGCCGAG GCCGTCGAGT TCGCGGCGTC GCAAGCGTGG 
TCCAACGCCA AGGTCGGCAT GGTCAACTGG TCGTACGGTG GTTCTTCCCA ACTGGCGACG 
GCGCAGCACC GGCCGCCGCA CCTTCGGGCC ATCGTGCCCG GCATGGTGTT GACGGACTTC 
CGCGACGCCT TGATGCCCGG CGGCGTGCCG GCGCCCGGCT TCATCACGCC GCTGCGCGGC 
TCCATGCGCG CCTACTGGGA GAAGGTGGTC GCGCAGACGG CAAGGGAAGA GGGCGATGCC 
GCCTGCCTGG CGCAGATCCC GAAGAACCTC GCGGCCGAAG ACACGAACTC CGTGATGCAC 
CTGTTCCTGT CGCATCCCTT GCGGGACGAG CGCATGAAGA GCTTCGACCT GGCGCCGCAT 
GCCGACCGCG TGCAGGTTCC CGTGCTGTCG CTCGAAGCGT TCCAGGACCA GGCCATCACG 
CCGCGCAGCG GCTACTACCA GTCCCGGCTC GATCCCGCCA GGCTGTGGTC GGTGCAGACC 
AACGGCCGGC ACGACATGTA CCTGGCCGCG GATTTCCAGG CGATGGCCGT GCGTTTTCTC 
GACCGCTTCG TCAAGGGAGA GAACAACGGA TTCGAGCGTG ACACACCACG CACCACCGTA 
TGGATGGAAA GCTCCGAAGC AGGCGGCAAC GCACTGGAGC GGCGCGTTTC CGCCAGGGCC 
CGCTGGGTGG TGCAAAGAGG CTCGATCCGC AGCGATGACC TGGCCGTCAA GGCGTTCCAC 
CTGGGTGCGG GCCAGACCCT CGCCGATGCC CCTGGCTCCG GCGCTGCCGA TAGCTTCGAC 
TACCCGGGCG CCGGTGTGGC CGTCAACGAC ATTGCGGGAA GGAGCTTCTG GGGCCCGCTG 
CCTGGCGACT GGAAGACCAC GGGCGTGGCC TACACATCGC CGCCATTGGA TGAGGACATG 
ATGGTCTTCG GACCGGGCAG CGCCGACCTC TGGGTCACGG CCGGCGCCGG CGACGCCGAC 
CTGCAGGTCA CCGTCACGGA ACTCCGGCCG GACGGGCAGG AGATCTATGT CCAGCGCGGC 
TGGCTGCGCT TGTCGAACCG CGCCCTGGAC ACGGCGCGCT CGACGCCGCT GTTGCCCGTT 
CGGCTCGAAC GGCCGGAGCA GCCGATGCCG CTGCTGCCGG GCCGGCCGGT CCTCGCCCGC 
GTCGAGATCC ACAAGATGGG CCACTACTTT CGCGCCGGCT CGCGGCTGCG GATCTGGATC 
GACACGCCCG CACAGACCGG TGGCCTGGTG TTCGACACCT TCACGCAGAA GCAGCGCGTC 
CATGTGCTGC ACAACGCCAG GTACGACTCC GTGGTGCGGC TCGGCGTGCT GAAGGACGTG 
AAGGGACCTG CAGGCTATCC GGCGTGCGGC GAGACGATCC TGCAGCCGTG CCGGCCGGAC 
CCGCTGGCCA TTCGCTGA 

 

Protein sequence

MKKLIAAAIT LATAFVTSLA AHGQDAPLDP DTGLPLSPPF DFPERGPAAP FWAKRLTGYF 
KTSDGIRLRY SVLLPKASGR FPVILSINGY DAGSIGGTPY LQYKTSMSIE LDRRLVDAGY 
AVMGVNAAGS GCSAGPLEYT RPQLGRHGAE AVEFAASQAW SNAKVGMVNW SYGGSSQLAT 
AQHRPPHLRA IVPGMVLTDF RDALMPGGVP APGFITPLRG SMRAYWEKVV AQTAREEGDA 
ACLAQIPKNL AAEDTNSVMH LFLSHPLRDE RMKSFDLAPH ADRVQVPVLS LEAFQDQAIT 
PRSGYYQSRL DPARLWSVQT NGRHDMYLAA DFQAMAVRFL DRFVKGENNG FERDTPRTTV 
WMESSEAGGN ALERRVSARA RWVVQRGSIR SDDLAVKAFH LGAGQTLADA PGSGAADSFD 
YPGAGVAVND IAGRSFWGPL PGDWKTTGVA YTSPPLDEDM MVFGPGSADL WVTAGAGDAD 
LQVTVTELRP DGQEIYVQRG WLRLSNRALD TARSTPLLPV RLERPEQPMP LLPGRPVLAR 
VEIHKMGHYF RAGSRLRIWI DTPAQTGGLV FDTFTQKQRV HVLHNARYDS VVRLGVLKDV 
KGPAGYPACG ETILQPCRPD PLAIR