Gene Vapar_5412 details

Gene Information

• Locus tag: Vapar_5412
• ID: 7975106
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 118287
• End bp: 118988
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644796000
• Product: Carboxymethylenebutenolidase
• Protein accession: YP_002947274
• Protein GI: 239820089
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG0412] Dienelactone hydrolase and related enzymes

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACGACC CGCTGCAAGT CACCACCACC CGCGGCAGCT TCACCGCGTA CGTCGCCCGT 
CCGCAGAAAC TTCCCGCGCC AGCCATCGTC GTCATTCACG AAGTCTTCGG AGTCAATGCC 
GACATGCGCC AGTCCTGCGA CGAACTCGCG GCGCAAGGCT ATCTGGCCAT CTGCCCCGAC 
CTGTTCTGGC GAATCGCGCC GGGCGTCGAC CTCACCGACC GCACGGAAGC GGAACGCGCG 
CGGGCCCTGG CGCTGTACAA CGCCTTCGAT CTCGATGCCG GTGTGAACGA CATCGCCGCC 
GCCCTGCAGG TCGCCCGTGC CATGCCGGAC GCCACGAGCA AAGTCGGAGT GGTCGGCTAC 
TGCCTCGGCG GCCTGCTGGC CTTCCTCACG GCCGCACGCG TGGGCCCCGA CGCAGTGGTG 
GCCTACTACC CCGGCAACGC CGACAAGTAC CTCCGGGAAG CGGACCAGAT CGCCAGCCCG 
CTGATCGTTC ACCTCGCGGA AAAAGACGAA TACATCCCGG CCGACGCACA ACGGGAGATA 
TCGGCTGCCT TGAAGGGGCG CCCGCAGGTG CAGGTCTACA GCTACCCGGA TCGCGGCCAC 
GCCTTTGCAC GGCACCGCGG CATCGCCTAC GACGCCGAAG CGGCGGCCCT GGCCAACGGC 
AGGACCGCAG CCTTCCTGGC CCTTCATCTG CAGCCGCGCT GA 

 

Protein sequence

MHDPLQVTTT RGSFTAYVAR PQKLPAPAIV VIHEVFGVNA DMRQSCDELA AQGYLAICPD 
LFWRIAPGVD LTDRTEAERA RALALYNAFD LDAGVNDIAA ALQVARAMPD ATSKVGVVGY 
CLGGLLAFLT AARVGPDAVV AYYPGNADKY LREADQIASP LIVHLAEKDE YIPADAQREI 
SAALKGRPQV QVYSYPDRGH AFARHRGIAY DAEAAALANG RTAAFLALHL QPR