| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5408 |
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| Symbol | |
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| ID | 7975869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 112206 |
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| End bp | 115067 |
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| Gene Length | 2862 bp |
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| Protein Length | 953 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795996 |
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| Product | transcriptional regulator, winged helix family |
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| Protein accession | YP_002947270 |
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| Protein GI | 239820085 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3903] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.17847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACGGCA TCGCGGCGCG CTCCACGTCA TCGCAGGCGC ATGCCGGCGC GTCGCAGGGG
CCGAGCGAGG TCCGCTGGCG CTTTGGCGCG TTCATCGTCT GGGAGGCCCA GCGCCGGCTC
GAAAGACTCG GGCAGAGCGT GCGCCTGGGC TCCCGCTCGT TCGAACTGCT GCTGCAACTG
CTCAGGCGCG TGGGCGAAGT CGTGGGCAAG GACGAGCTGC TCGCCACCGT CTGGGCCGGG
GTGGTGGTCG AGGAGTCCAG TGTGCGGGTC CACATCTCCG CGCTCCGCAA GGCCTTGGGG
GAGCCGCAAG ACGGGGACAA CTGCAAGGAA TGGATTTCGA ACATTCCCCT GCGCGGCTAC
CGGTTCAATG GAACGGTTTT TCGCGAACAG GTCGGCATGC CGACCGAGGA TCGGCCGGGG
GCGGCGGCCC TGGCGTTCGC GAAGCTGCCG GAGCGCCTCA CCCGGCTTGT GGGCCGCGAC
GCCGACATGG CGCGCGTGCT GGCGGCGCTC GCCACGCGCC GGCTGGTCAC CATCGTCGGC
GCCGGCGGCA TCGGGAAGAC CCGTGTCGCC ATCCATGCGG CCGATTGCCA TGCAGAACGC
ACGGCCATGC AATTGGCCTT CATCGATCTC TCGCCGCTGG TCTCGCAGGC CCATCTGGCG
AGCACGGTGG CCCGGTCGCT CGGCGCGCCG CCGGACACCC CCGACACGAC GCGGGCCATC
CTCCAGAGGC TGGCGGACCG CGATGTGCTC CTGCTGATCG ACAACTGCGA GCACATGCTG
GACGCACTGG CGCCGCTCAT CGCCGAACTG CTCGGCGCCC TGCCCGACCT GCGCGTCCTC
GCAACCAGCC GGGAGGCCAT TCGCATCGAG GGAGAACACG TCGAGCGGCT GTCGCCGCTC
GCGGTGCCCG ACGCGCAGTG TGCCGACCTG GCCGAAGCCA TGGCGTCGCC GGCGGTCGAA
CTGCTGGTCG AGCGTGCGAA GGCCGTGGGT GCCCGCGCGT TCGAGGATTC CGATGGCCGG
CTGCTCGCCG CAGTCGCCCG GCAGGTGGAC GGCATCCCGC TCGCCATCGA ACTGGTGGCT
GCACGCCTGG GCGTGCAGCC GATCGGCGAT CTTGCGTTCC GGCTGAATGA CCACATGCGG
CTCTATTCCG CGGGCAGCAG GGCCGTCCTG CCCCGGCACA GCACGCTCGC GGCGGCGCTG
GACTGGAGCA TCGCGCTGCT GGACGATGCG GAACTGCGGC TCTTCCGGCG GCTCTCGGTC
TTCCGGGGGC GCTTCGATGT CGAGTCGGCG CTGAGCGTCA CCCGGGCGGA CATGGACTCC
GAAGTGGCGT TCGATGCATT GATCTCGCTG GCGAACAAGT CGCTGGTGTC GTTCGACAAC
AGCGACGCCA TCGCGCCCTA CCGGCTGCTC GACACGACGC GAAGCTACGC CGCCGCGCTT
CTCGCGCAAA CCGATGAAGG CCCGGCAATG CGGCGGCGCC ATGCGCTCTT CATGCGCGAG
CTGATGGGCG CCGCGACCTC GGATTCGGGC GAACTCACCG TGCAGGCCTG GAACGCGCGC
TACGCACACC GGCTGGACGA CGTGCGCAGT GCGTTGGACG ACTGCCTGGC GCAGCAGGAC
GATTGGGAGA CCGGCGCCGC GCTCACCATC GCTTCGGCGC CCCTGTGGTT TCACGTCTCG
CAGGTCGAGG AGTACCGTGA CCGGGTCATC GCCGCGCTCG CGTGCCTCGC GCAACAGCCG
GGCACGGGCA CGGAGACAGA GGCCTGGCTG CAGATCGCAC TGGGCAATGC GCTGTGGCAC
ACACGGGGAC CGGTACCGGA AATGGGCGCC GCCTACGATC GGGCGCTTGC TGTCGCCATG
TCGGCCAGCT CGGTCGTGCT GGAGCTTCAG GCCCGCTGGG GCATCTGCGT GCTGCATGCG
ATCCGCGGCG AGTATGCGGC CGCGTTGCAC CACTCGCAGG TGCTGTTCGA ATTCGCGCAA
TCGACGCCCG ACCCCGCCGC GCTCAACCTG GCGCACCGAA TGACCGCGCT GGCGAGTCAC
TTCTGCGGGG ATTTTTCTGC GGCGAGTGCC GGCGCCCAGG CGGCGATCCT TGTGGGCAGC
ACCGTGCGCC AGACGCCCGT CAACTTGTTC CAGGTCGATG CCGCCGTCGC ATCGAATGCC
TTGCTGGCCC GCACGCTCTG GCTCCAGGGC GATGCGGCGA AGGCCATGGC TACCGCCACC
CGAGCGGTGG CTCTCGCCGA GGCCGGGGGC AATGCGCTGT CTCTGTGCTT CGCGCTGTTC
GGCACATGCC CCGTCGCCCT CTGGTCGGGC GAGCTGGAAC TGGCGCGCAA ATGGGTTCGC
ATGCTGCTGG ACGAGGCCCA GCGCAGAGGG CTGGCGTACT GGCACCAGTG GGCACACTGC
TATGCGCTGG GCCTGCAGGC GCGCACCGCG GACGACCGGG ACCGCCATGT TCGCCGAGTC
GCGCAGCAAC TCGACGATTT CGACGCGCCA CGCAAGGAAA TGCTGGTGAC CTTCTGCGCC
GACTGGATCG ACGACGAGAC GATCGCGCGC GCCGGTGCCG GGCACGGCCA ATGGAGCGCG
GCCGAGACCT GGCGCGCTGC GGGCCAGCGT TGCGAGCAGC GCGGCCTCGA CGATGAAGCC
GAGGCGTTCT ACTTGCGTGC CATCGGCACC GCCAGGCAGC AAGGCGCGCT GGGATGGGAA
TTTCGTGCGG CGATCAGCGC CTCCCAGCTG TGGGTTCGCC GGGGCAAGGC GAAGGACGCC
CTCGACCTGC TGGACGAGGT CTGCGCGCGC GCGGCACCTC GGGGCGAGCA CCCCGGCCTT
GCGCAAGCCC GCGCACTGCG CAGCGCACTC TCCCGGAACT GA
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| Protein sequence | MYGIAARSTS SQAHAGASQG PSEVRWRFGA FIVWEAQRRL ERLGQSVRLG SRSFELLLQL
LRRVGEVVGK DELLATVWAG VVVEESSVRV HISALRKALG EPQDGDNCKE WISNIPLRGY
RFNGTVFREQ VGMPTEDRPG AAALAFAKLP ERLTRLVGRD ADMARVLAAL ATRRLVTIVG
AGGIGKTRVA IHAADCHAER TAMQLAFIDL SPLVSQAHLA STVARSLGAP PDTPDTTRAI
LQRLADRDVL LLIDNCEHML DALAPLIAEL LGALPDLRVL ATSREAIRIE GEHVERLSPL
AVPDAQCADL AEAMASPAVE LLVERAKAVG ARAFEDSDGR LLAAVARQVD GIPLAIELVA
ARLGVQPIGD LAFRLNDHMR LYSAGSRAVL PRHSTLAAAL DWSIALLDDA ELRLFRRLSV
FRGRFDVESA LSVTRADMDS EVAFDALISL ANKSLVSFDN SDAIAPYRLL DTTRSYAAAL
LAQTDEGPAM RRRHALFMRE LMGAATSDSG ELTVQAWNAR YAHRLDDVRS ALDDCLAQQD
DWETGAALTI ASAPLWFHVS QVEEYRDRVI AALACLAQQP GTGTETEAWL QIALGNALWH
TRGPVPEMGA AYDRALAVAM SASSVVLELQ ARWGICVLHA IRGEYAAALH HSQVLFEFAQ
STPDPAALNL AHRMTALASH FCGDFSAASA GAQAAILVGS TVRQTPVNLF QVDAAVASNA
LLARTLWLQG DAAKAMATAT RAVALAEAGG NALSLCFALF GTCPVALWSG ELELARKWVR
MLLDEAQRRG LAYWHQWAHC YALGLQARTA DDRDRHVRRV AQQLDDFDAP RKEMLVTFCA
DWIDDETIAR AGAGHGQWSA AETWRAAGQR CEQRGLDDEA EAFYLRAIGT ARQQGALGWE
FRAAISASQL WVRRGKAKDA LDLLDEVCAR AAPRGEHPGL AQARALRSAL SRN
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