| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5402 |
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| Symbol | |
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| ID | 7975863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 105525 |
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| End bp | 108230 |
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| Gene Length | 2706 bp |
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| Protein Length | 901 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795991 |
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| Product | transcriptional regulator, winged helix family |
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| Protein accession | YP_002947265 |
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| Protein GI | 239820080 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3903] Predicted ATPase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTGAGA TTCGCCGGTG GCGCTTCGGC GCCTTCGCGC TGTGGGAGGC CGAGCCAAGG
CTCGAGCGCG ACGGGCAGCC GGTGCGGCTT GGATCGCGCG CCATCGGCCT GCTGGTCGCA
CTCTTGGAGC GCGCCGGCGA AGTGATCAGC AAGGACGAGC TCCTCGCGGC GGTCTGGCCG
GACACGGTGG TCGAAGAGGC GAGCGTTCGA GTCCATATGT CGATCCTGCG CAAGGCCCTG
GGTCCGCCCG GAGCTCAGGA CGGGTGCCTG GAATGGATTG CCAACATCCC ACTGCGCGGC
TATCGCTTCC TGGGGCGGGT GCACTGCGAG TTCTTGCCGT CCGCCATCGC CGTGCAGGTG
GCTCATGCGT CGCTGCGGGA TGCTCCCGCA GCGTTGCCCG CTCGCCTCGC CAAGCTCGTG
GGGCGCGAGG TGGAGGTCGA GCGCCTGCTC GGCATGCTTG CGGCGAGCAG GCTCGTCACG
GTCGCGGGGC CCGGCGGCGT GGGCAAGACC AGCGTTGCCA TCTGCGTCGC AGCACGCTAC
CGGGAACGGC AGCAAGCCCA GCTTGGTTTC GTCGATCTTG CACCCCTGAC ATCGCAGGAC
CACGTGCTGA CGACGATGGC GCGCGCCATC GGCGTGCGAG GCGGCGTGCC GGACATCGAG
GAAGCCATCG TCCAGCGCCT CGAAGGCCAG GCGATGCTGC TGCTCGTGGA CAACTGCGAG
CATGTCATCG AGAGGCTGTC GCCGCTCCTG GGCAGGTTCC TGGCGGCGTT GCCCGGGCTG
CAGGTTCTTG CAACCAGCCG CGAGGTGCTG CGCGTGGGAG GCGAGCATGT CTTTCGCCTG
GCGCCCCTGG CGGTCCACCA GTCCCAGCCC GGCTCCCTGG CGCTTGCGTT GCGCTCGCCG
GCGGTGCAGT TGCTCGTCGA GAGAGCCCAG GCCGCGGGCG CCCGCGGATT CGACGACGCG
AGCAGCGGTC CGCTGACCAG GATCTGCCAA CAGGTGGACG GAATCCCGCT GGCGATCGAG
CTGGTCGCGG CCCGCCTGGG GGCCCAGCCC GTGAGCGAGC TGGCATTCAG GCTCGACGAT
CACATGCGCC TGCATTCGAC GGCCAGGCGG GCTGCGCTGG CAAGACAACG CACGCTGGCT
GCGACGCTGG ACTGGAGCAT TGGCCTGCTG GGCGCCGCCG AGCTGCTTCT GTTTCGCAGG
TTGTCGGTGT TCCGCGCCTA CTTCGGCGTC GCAGCGGCGC TGAGCGTGGC AGCCAGTGCG
CTGGACCCCG ACGTGGCGTC CGACGCGTTG CTGAGCCTGG CCAGCAAGTC GCTCGTCGTG
TACGACACCG ACCAGGCCGC GGACTCGCCC TACCGCCTGC TCGACACCAC CCGCAGCTAT
GCGCATGCTC TGCTCGTGCG GGCGGGCGAG CGAGACGCGG TATCGAAAAG CCATGCCCTT
TTCATGCTGG ACCTCATGGG CCTTGCCACC GCGGACCTCG CTTTGCTGGA CGCCGATGCC
TGGACCCAGC GCTACCGCGG CTGCCTGGAC GACGTTCGTG CAGCTCTGGA TGCCTGCATC
GGCCACCACG ACGACATGAC GATCGCGGGC GCGCTCACCG TCGCATCGGC GCCGCTCTGG
TTCCGCTTGT CCGAGGTCAG CGAATACCGG GATCGCGTTC GCGCGGCGCT GGACCATGTC
GATGTGCTGA AGGTACCCGA CCGCCTGACG GCCGGACGGC TGGAGATCGC GCTCTACAAC
GCCTTGTGGC ACACCGGCGG CACGGTGCCG GAGATGACAC AGGCGTGCGA GCGGGCGCTG
GATTGCGCAT TGGAACTGAA GGTGAAGACA CTCGAATTCC AGGCTCGGTG GGGCCTTTGC
GCGCTGAACA TCACGCGCGG CGCGTACACA CCGGCGTTGC GGCATGCCGA GATCCTGAGA
GAGTTTGCGA GCCACTCGAC CAACGCCGTG ACGCGCAACC TGTCGCACCG GATGCTGGCG
CTCGCCAATC ACTTCTGCGG CGCGTTCGCC GAGGCCAGGA TGCAGGCCGA AGCAGCGGCG
GACGTGGACG ACGCGACCCG GCGCAACCAT GCCAACGCGT TCCAGCCCGA CGCGCGCACC
ACCGCAATGG CCATTCTTGC CAGGACGCTG TGGATCCAGG GCGAGAGCCG TCTTGCCATG
GCCACCGCCA TCCGGTGCAT GGAGGAGGCT GAGGCGCTGG GACACACGCT GTCGCTATGC
GTTGCCCTCT TCTGGATCTG TCCGATGGCC ATATGGGCCC TCGAACAACG GGCGGCCCGC
GCCTGGATCG ACACGATGCT GCAGCAGACC CGGTCCAAGG GCTTCGCCTA CTGGCATGAC
TGGGCGCTTT GCTACGACGA CGCCATGAAG ATCGGCGAGG TCGACGACGC CGGCGCGCAC
ATCGACGCCG TCGCGGCAAA GGTCCTGGCC ATGGACGAGC CCCGCAGGGA GATGATGGTC
ACGTTCTGCG ACCAGTGGGT GGATGATGAC CTGGTTGCTC GCGCGACGCG GGGCGAAGGG
CAGTGGAGTG CCGCCGAGGT TTGCCGCGCT GCCGGGCGGC GCAAGGAGCT GCGGGGCGAC
GATGCCGAAG CCGAGGCGCT TTATCTGCAG GCCCACGCCC TTGCGCGCTC GCAAGGCGCA
CTCGCCTGGG AACTGCGTGC AGCGGGTGCG CTGGAGGAAC TGCGCGCCGG GGCAGCTCAG
CGATGA
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| Protein sequence | MSEIRRWRFG AFALWEAEPR LERDGQPVRL GSRAIGLLVA LLERAGEVIS KDELLAAVWP
DTVVEEASVR VHMSILRKAL GPPGAQDGCL EWIANIPLRG YRFLGRVHCE FLPSAIAVQV
AHASLRDAPA ALPARLAKLV GREVEVERLL GMLAASRLVT VAGPGGVGKT SVAICVAARY
RERQQAQLGF VDLAPLTSQD HVLTTMARAI GVRGGVPDIE EAIVQRLEGQ AMLLLVDNCE
HVIERLSPLL GRFLAALPGL QVLATSREVL RVGGEHVFRL APLAVHQSQP GSLALALRSP
AVQLLVERAQ AAGARGFDDA SSGPLTRICQ QVDGIPLAIE LVAARLGAQP VSELAFRLDD
HMRLHSTARR AALARQRTLA ATLDWSIGLL GAAELLLFRR LSVFRAYFGV AAALSVAASA
LDPDVASDAL LSLASKSLVV YDTDQAADSP YRLLDTTRSY AHALLVRAGE RDAVSKSHAL
FMLDLMGLAT ADLALLDADA WTQRYRGCLD DVRAALDACI GHHDDMTIAG ALTVASAPLW
FRLSEVSEYR DRVRAALDHV DVLKVPDRLT AGRLEIALYN ALWHTGGTVP EMTQACERAL
DCALELKVKT LEFQARWGLC ALNITRGAYT PALRHAEILR EFASHSTNAV TRNLSHRMLA
LANHFCGAFA EARMQAEAAA DVDDATRRNH ANAFQPDART TAMAILARTL WIQGESRLAM
ATAIRCMEEA EALGHTLSLC VALFWICPMA IWALEQRAAR AWIDTMLQQT RSKGFAYWHD
WALCYDDAMK IGEVDDAGAH IDAVAAKVLA MDEPRREMMV TFCDQWVDDD LVARATRGEG
QWSAAEVCRA AGRRKELRGD DAEAEALYLQ AHALARSQGA LAWELRAAGA LEELRAGAAQ
R
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