| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5399 |
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| Symbol | |
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| ID | 7975860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 100465 |
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| End bp | 102225 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795989 |
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| Product | Gluconate 2-dehydrogenase (acceptor) |
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| Protein accession | YP_002947263 |
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| Protein GI | 239820078 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.690827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCACA AACTTCCCAA ACGCGCCGTC GTCTTCGTCG GCGGAGGCCT CACCGCGGGC
CTGGCGGCGC GGCAGATGAT GGACTCCGGC ATCGACGTGC TGGTGCTCGA GCGCGGCGGC
GATCTCGCGG GCAGCGCAGC CGCCACACTG CCCAACCAGC GCGACGAATT GCGTTGGGGC
GTGCGCAACG GCCTGGTGCA GAACTGGGCC AACGAAACCT ACACCCTGCG CCACGCCACC
AGCGAGAGCG CGTTGCCCGT GCGCCGCATG GAAGCCTTCC TCCCGGGCGA AGGCATGGGC
GGTGCGGCGA ACCACTGGAA CGGCCAGACC TGGCGTTGGG CCGAGTACGA CCCGGCCCTG
CGCACCCGCC TCGAGTCCCG CTACGGCAAA GCCGCGATTC CGCGCGAGAT GATGGTGCAA
GACTGGGGCA TCAGCTACGC CGAGATGGAG CCCTACCACG ACCTGTTCGA GCAGCTCTTC
GGCATCGCGG GGCAGGCCGG CAATGTGGGC GGACGGCTGA TCGACGGCGG CAACCCTTTC
GAGGCGCCCC GGCAACGCGA CTTTCCGCAG CCGCCGCTCG AGATCCTCGA GTCGGGCCGC
ATCTTCAAGG CCGCCGCGCA AAGCCTTGGC TACAAGCCGT TCCCGCTGCC CGCGGCCAAC
TCACCGCGCG CCTACACCAA CCCCGATGGC GCAAGCCTTG CGCCATGCCA GTACTGCGGC
CACTGCGAGC GCTTTTTCTG CGAAGCCAAC GCCAAGGCCA GTCCGGCGGT GTTGCTGTAC
CCCTTGCTGC GGAAACAGCG CAATTTCGAG ATCCGGCTCC ATTCGCAGGT GACCGGCCTC
GTCTACGACA AGCACGCCAG GCGCGTGACG GCCGTGCAGT TCATCGATCT GCAGACCGCG
CAAATGTACG AGCAGCCGGC CGATGTCGTC GTGCTGTCCG GCTTCACCAT GACCAACACC
AAGCTGCTGC TCACGAGCGG CATCGGGCGC CCCTACGACC CGAAGACGGG CAAGGGCGTG
GTCGGCAAGA ACTTCTGCTA CCAGGTGATG TCGTCGGTGC CGGTGTTCTT CAAGGACCGC
TTCATCAATC CGTTCATGGC CTCGGGCGCC TCGCAGATGG TGGTGGACGA GTTCAACGGC
GACAACTTCG ACCATGCCGG GCTCGGCTTC TTCGGCGGCG GCTACATCTA TTCGAACATG
ACGAACGGGC GCCCCATCAA TGCCCGGCTC CATCCGGCCG GAACGCCGCG CTGGGGATCG
GCCTGGAAGC AGGCCAACGC CGACTGGTAT GCGCACGCCT TCAACGTCGC GGTGCACGGC
AGCAACTACC CGCACAGCCA GAACTACCTC GATCTCGACC CGACGTACCG CGACGCCTAT
GGCTCGCCGC TGTTGCGCAT GACCTTCAAC TTCCACGAGA ACGACCATCG CATGAGCGAA
TACGTCACGA ACAAGGCCGC CGGCATCGCG CGCGCCATGG GTGCCACGAC GGTCGGCGCT
GCGCAACCCC GGCGCGGCGA CTTCGACGCA CGGCAGTACC AGACGACGCA CACCACCGGC
GGCACCGTCA TGGGCGCGGA CCCGTCGACG AGCGTGGTCT CGCCCCACCT GCAGCACTGG
GACGCGCAGA ACCTCTTCGT GGTCGGCGCA TCCGTGTACG CGCACAACGC GGGCTACAAC
CCGACCGGTC CGCTCGCGGC ACTGGCGCTG CGCCTGGGCG ACGACCTGGT GCGCTACGCC
AGGCAACCGC GCATGCTTTG A
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| Protein sequence | MTHKLPKRAV VFVGGGLTAG LAARQMMDSG IDVLVLERGG DLAGSAAATL PNQRDELRWG
VRNGLVQNWA NETYTLRHAT SESALPVRRM EAFLPGEGMG GAANHWNGQT WRWAEYDPAL
RTRLESRYGK AAIPREMMVQ DWGISYAEME PYHDLFEQLF GIAGQAGNVG GRLIDGGNPF
EAPRQRDFPQ PPLEILESGR IFKAAAQSLG YKPFPLPAAN SPRAYTNPDG ASLAPCQYCG
HCERFFCEAN AKASPAVLLY PLLRKQRNFE IRLHSQVTGL VYDKHARRVT AVQFIDLQTA
QMYEQPADVV VLSGFTMTNT KLLLTSGIGR PYDPKTGKGV VGKNFCYQVM SSVPVFFKDR
FINPFMASGA SQMVVDEFNG DNFDHAGLGF FGGGYIYSNM TNGRPINARL HPAGTPRWGS
AWKQANADWY AHAFNVAVHG SNYPHSQNYL DLDPTYRDAY GSPLLRMTFN FHENDHRMSE
YVTNKAAGIA RAMGATTVGA AQPRRGDFDA RQYQTTHTTG GTVMGADPST SVVSPHLQHW
DAQNLFVVGA SVYAHNAGYN PTGPLAALAL RLGDDLVRYA RQPRML
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