Gene Vapar_5398 details

Gene Information

• Locus tag: Vapar_5398
• ID: 7975859
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 99699
• End bp: 100451
• Gene Length: 753 bp
• Protein Length: 250 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644795988
• Product: hypothetical protein
• Protein accession: YP_002947262
• Protein GI: 239820077

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCTTGA ATGACCAAGA ACCGCCCGCA CGGCGGCTCT TCCTGCGCCA GATCGGCGGC 
GCATCCAGCG TCGCCGCACT CGCGGCGCCC GCACTGCTCG GTGGCCTCGC CAGCCCGCTC 
GCTTCGGCGC AGCAGGGCAG CGCAGCCCGC CCCACCGACG ACGCCCACCC CTCGGGCTAC 
CTGTCGCTGG GCCCACAGGA AGCCGCCTGC GTCGAGGCCC TCGTCAACGT GATGTGCCCA 
GCCGATGCGA TGACACCGAA CGGTGTCGAC TGCGGCTTGC ATCTCTACAT CGATCGTCAG 
CTCGCTGGCG GCTGGGGGCG TGGCGACCAG CTCTATCGGC AGGGCCCCTG GCGCCCCGGC 
AAACCGCAGC ACGGCTACCA GTCGCCCCTC ACCCCCGAGC AGCACTTCAA GGCCGGCCTC 
GCGGTGCTGC GTCGCGAGGC CCGGCAACGC ACGGGCAAGG CCGTCGAGCA GCTCGAGGCC 
GGCCCGCTCG ACGCCCTGCT GCAGGAGGTC GCAGCTGGCC AGATGGACGA CGAGCGCTTT 
GCGCTCGGCG CATGGTTCAA CGACTTCTTC TATCCGCTGT TCGTCCAGGC CTGCTTTGCC 
GACCCGATGT ACGGAGGCAA CCGCGACAAG ACTTTCTGGC GCGCCGTGGG CTTCCCCGGC 
CTGCCCGCTT TTCACGGACG CAACGTGGTC CAGTTCCGCG GCCTGCCCTT CCCCGGCGCA 
GCCAAGCCGC AATCGATCGA GGACTTCAGC TGA 

 

Protein sequence

MSLNDQEPPA RRLFLRQIGG ASSVAALAAP ALLGGLASPL ASAQQGSAAR PTDDAHPSGY 
LSLGPQEAAC VEALVNVMCP ADAMTPNGVD CGLHLYIDRQ LAGGWGRGDQ LYRQGPWRPG 
KPQHGYQSPL TPEQHFKAGL AVLRREARQR TGKAVEQLEA GPLDALLQEV AAGQMDDERF 
ALGAWFNDFF YPLFVQACFA DPMYGGNRDK TFWRAVGFPG LPAFHGRNVV QFRGLPFPGA 
AKPQSIEDFS