Gene Vapar_5390 details

Gene Information

• Locus tag: Vapar_5390
• ID: 7975851
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 95492
• End bp: 96067
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644795984
• Product: DNA polymerase beta domain protein region
• Protein accession: YP_002947258
• Protein GI: 239820073

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.536785
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTCTG CCGACTTTTT ATTCACTCCG ACAGTTCAGC GCGTTCTGGC GGCCACCCTG 
GCCAACCCAG ACCGGTCATT CCTGCTGAGT GAGCTCCTGG ACCTGGCAGC AGGCGGCAGA 
GGCGGCGCTC AGCAGCAGAT TGAGCGGCTT TTGCAAGCTG GAGTCCTCAC TGAGGAGCCT 
CGGCGGGGGC GTCAGCGCAG CATCCGAGCT AACAAGGACT TCTTCCTGTT TGACGAGCTA 
AGCAGCATTG CGCGCAAGTC CTTCGGGGTC AAGGAGCCCC TGATGCGAGC TCTTGAACCG 
TTTGGCGATA GCATACGGGA GGCGTTCGTC TTTGGCTCTG TGGCCAAAGG CTCTGACAAC 
GGCCGAAGCG ACATCGACCT GGCCGTCATC GGGCGTGTGG CTTTACGTGA GGTGACCAAT 
GCCCTTCTGG ACCTCGAGCA GGAGCTCGGA AGGCCCATTC ATCTGAGCTT GTATGACCCA 
GAGGAGTGGG AAGAACTGAT TTCAAGTGAC CAAGTCATGG CTCAGATTGC AAAAGGGCCA 
AAGTTGGAGC TGATTCGCAA TGATGAGACC GTCTGA 

 

Protein sequence

MSSADFLFTP TVQRVLAATL ANPDRSFLLS ELLDLAAGGR GGAQQQIERL LQAGVLTEEP 
RRGRQRSIRA NKDFFLFDEL SSIARKSFGV KEPLMRALEP FGDSIREAFV FGSVAKGSDN 
GRSDIDLAVI GRVALREVTN ALLDLEQELG RPIHLSLYDP EEWEELISSD QVMAQIAKGP 
KLELIRNDET V