| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5386 |
|---|
| Symbol | |
|---|
| ID | 7975847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 91558 |
|---|
| End bp | 92532 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795980 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002947254 |
|---|
| Protein GI | 239820069 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCCA GATGGATCAA GCCACTGCTG TCCGCAGCAG CGCTGTGCAT CGCCGCGTCG
GCGGCGTCGG CCGCATGGCA GCCGACACAG CCGGTCACGC TCGTCGTGCC CTACACACCC
GGCACGGGCA TCGACCTGAT CGCGCGCCAG CTTTCCGCGC ACCTGCCAAG CGCGCTCGGA
CAGCCCGTGA TCGTGGAGAA CGTGGCGGGC GCCAGCGGCA ACATCGGGAG CGAACGGGTG
GCACGGGCCA AGCCCGATGG CCACACGCTG CTGGTCCAGG TCAACACCCT TGTCATGAAC
AAGAGCCTGT ACAAGACCTT GTCGTATGAC CCCGTCGGCG ACTTCACTCC CGTTGCCCAG
ACCTCCTGGG GAACCCTGCT CCTGGTGGCC AACCCGAACG TGCAGAAAAC GGCGACCGTG
AGCGAAGTCG TGAACGCCGC GAAGGCGAAG CCCGGGCAGC TGACCTACGC CACGCCAGGC
GTCGGCACGC CCCATCACCT GTCGATGGCG CTGTTTCTCC AGCGCAGCGG TGCCGAGATG
CTGCATGTTC CCTACAAAGG GACGGCAGGG GCCGTCACCG ACCTGCTCGG CGGGCGGATC
GACTACATGT TCCTGCCGGT GCACGTCGCG CTGCAGCACA TCCAGGCCGG CAAGCTGAAG
GCCATTGCAA CCGGCAGCGC CAAGCGGCTG CCGCAGCTTC CCGATGTACC GACGCTCGCG
GAGGCCGGCG TCACCCCGGA CAACATCGAC ATGTGGTACG GGGTGCTGGC GCCCAAGGGA
ACACCCGCGG ACGTGGTGGA GCGCCTGAAC CTGGAGATCG GCAAGGTCCT CAGGCAGCCT
GACGTCGCGA AGTCCTTCGA ATCGCAGGGC ATGGTGCCGG CGGTCTCCAC GCCGGCTGCC
TTCGGGGCGC TGGTTGCCAA GGACGCGCAG CGCTGGGCGG AGGTGGTGAA GAAAGGCAAC
ATCACCGCGG ATTGA
|
|---|
| Protein sequence | MFARWIKPLL SAAALCIAAS AASAAWQPTQ PVTLVVPYTP GTGIDLIARQ LSAHLPSALG
QPVIVENVAG ASGNIGSERV ARAKPDGHTL LVQVNTLVMN KSLYKTLSYD PVGDFTPVAQ
TSWGTLLLVA NPNVQKTATV SEVVNAAKAK PGQLTYATPG VGTPHHLSMA LFLQRSGAEM
LHVPYKGTAG AVTDLLGGRI DYMFLPVHVA LQHIQAGKLK AIATGSAKRL PQLPDVPTLA
EAGVTPDNID MWYGVLAPKG TPADVVERLN LEIGKVLRQP DVAKSFESQG MVPAVSTPAA
FGALVAKDAQ RWAEVVKKGN ITAD
|
|---|
| |