| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5385 |
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| Symbol | |
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| ID | 7975846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 90749 |
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| End bp | 91537 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644795979 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002947253 |
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| Protein GI | 239820068 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCGC TGCAAGGCAA GGTCGCCGTC GTGACCGGCG CCGCCGCGCT GCTGGGCGGG
GCCATCGTGC GGGCCTTCGT GCAGGCCGGC GCGCGCGTGG TGGCGGTCGA CATCGACGCG
GTGCGCGGCG AGGCGCTGGC GGCCGGGTTG GGCGAGGGTT GCCGCTTCGT CGCCTGCGAC
ATCGCCTCGG ACGATGCGCT CGATGCGCTG GTGGCCGGCG TGCTGCGCAC CGAAGGCCGC
ATCGACTGCC TCGTCAACAA CGCCGTGGTC TACGGCGACG CGGGGCTCGG CGCCGCGCGC
GCCGACTGGC TGAGCGCGCT GAACGTCAAC CTGGTCTCGG GCGCGATGCT GGTGCAGAAG
AGCGCCGACG CGCTGGCCGC GCAGGGCGGC GCCATCGTGA ACATGGGCAG CGTCGGCGGC
AAGTTCGGCG CGGCGGGGCG GGCGCTGTAC CCGGCGGCCA AGGCGGCCAT CCTGCAACTC
ACGCGCAACC AGGCCGCCAC GCTGGCGCCG CGGGGCGTGC GGGTGAACTC GGTGTCGCCG
GGCTGGACCT GGTCGGACGC GCTGTCGCGC ATGGCGGACG GCGACCGTGC AAGGGCCGAC
CGCGTTGGCG CGCCGATGCA CCCGCTGGGC CGCGTGGGCG ACGGCGACGA CGTGGCGCAG
GTGGTGCTGT TCCTGTGCTC GGACGCGGCG CGCTTCGTCA CCGGCGCCGA CATTCCGGTG
GACGGCGGCT TTTCGATGCT CGGCCCGGAC CAGGGTCGAT CCGCGGGCGA TTGGTTCGGC
GCTGCGTAG
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| Protein sequence | MTPLQGKVAV VTGAAALLGG AIVRAFVQAG ARVVAVDIDA VRGEALAAGL GEGCRFVACD
IASDDALDAL VAGVLRTEGR IDCLVNNAVV YGDAGLGAAR ADWLSALNVN LVSGAMLVQK
SADALAAQGG AIVNMGSVGG KFGAAGRALY PAAKAAILQL TRNQAATLAP RGVRVNSVSP
GWTWSDALSR MADGDRARAD RVGAPMHPLG RVGDGDDVAQ VVLFLCSDAA RFVTGADIPV
DGGFSMLGPD QGRSAGDWFG AA
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