Gene Vapar_5380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5380 
Symbol 
ID7975841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp86114 
End bp87376 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content68% 
IMG OID644795974 
ProductCarboxymethylenebutenolidase 
Protein accessionYP_002947248 
Protein GI239820063 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0412] Dienelactone hydrolase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.204007 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGACA CCATCGACAT TCCGGCCGGC GACGGCACCC AGACCTTTCG CGGCTACCTG 
GCCCTGCCCG CCTCGGGCCG CGGCCCCGGC ATCGTGCTGT GCCAGGAGAT CTTCGGCATC
AACGACTACG TGCGCGAGGT GGCCGACCTC TACGCCGAAG AAGGCTACGT GGTGCTCGCG
CCCGACCTGT TCTGGCGCAT GGAGCCCGGC GTCGAGCTCG GCTACTCGCC CGAAGACTGG
CAGCGCGCCT TCGGCTTCTT CCAGAAGTTC GACATCGAGG CCGGCGTGGC CGACGTCACG
GCCAGCGTGA AGGCGCTGCG TGCGCACCCG GCCTGCACCG GCAAGGTCGG CGCGCTGGGC
TTCTGCCTCG GCGGCAAGCT GGCCTACCTG GCCGCCGCGC ACTCGGGCGT GGACGCGGCC
GTGGGCTACT ACGGCGTGGG CATCGAGGGC GCGCTCGACC TGGTGCCGAA GATCGATTGC
CCCATTGCGC TGCACTTTGC CGAGCTCGAC CAGTTCTGCC CGCCCGAGGC CCGCGCCCAG
GTGCTCGCGG CCTTCGCCGG CAAGCCCGCT GCGCACATGT ATGTCTACCC GGGCGTCGAC
CATGCGTTCG CGCGCACCGG CGGCGAGCAT TTCGACAAGC CCTCCACGCT CATGGCGCAC
CAGCGCTCGA TGGCGCTGTT CAAGGAAGCG ATCGGCCCGG TGTACGACCT CTCGGCGCTG
TGGGACAAGC ACTGCGAGTA CGAGTTCGCC ACGCGCGACG TGGTCGCCAC CATGGCCACG
ATGGTGAGCG AGCCCTATGT GAACCACATC CCGACCATGA CCGGCGGCGT CGGCGCCAGG
GAGCTGTCGC GCTTCTACAA GCACCACTTC ATTCCGACGA CGCCGCCCGA TACGCGGCTC
ACGCCCATCT CGCGCACGGT GGGTGCGACG CAGATCGTGG ACGAGATGCT GTTCAGCTTC
ACCCACACGG TCGAGATCGA TTGGCTGCTC CCGGGCATCG CGCCCACCGG CAGGGCGGTG
GAGATTCCGC TCGTGGCCAT CGTGAAGTTC CGCGGCGACA AGCTCTACCA CGAGCACATC
TACTGGGACC AGGCCAGCGT GCTGGTGCAG ATCGGCCTGC TCGATCCGAA GGGCCTGCCC
GTGGCCGGCG CCGAGACGGC GCGCAAGCTG GTCGACGAAA CGCAGCCGTC GAACACGCTG
ATGCCGCGCT GGAAAAAATC GGCCGCGCTC ACCATCGCCG ATCCGGCGCT GCCCTTGGGA
TGA
 
Protein sequence
MSDTIDIPAG DGTQTFRGYL ALPASGRGPG IVLCQEIFGI NDYVREVADL YAEEGYVVLA 
PDLFWRMEPG VELGYSPEDW QRAFGFFQKF DIEAGVADVT ASVKALRAHP ACTGKVGALG
FCLGGKLAYL AAAHSGVDAA VGYYGVGIEG ALDLVPKIDC PIALHFAELD QFCPPEARAQ
VLAAFAGKPA AHMYVYPGVD HAFARTGGEH FDKPSTLMAH QRSMALFKEA IGPVYDLSAL
WDKHCEYEFA TRDVVATMAT MVSEPYVNHI PTMTGGVGAR ELSRFYKHHF IPTTPPDTRL
TPISRTVGAT QIVDEMLFSF THTVEIDWLL PGIAPTGRAV EIPLVAIVKF RGDKLYHEHI
YWDQASVLVQ IGLLDPKGLP VAGAETARKL VDETQPSNTL MPRWKKSAAL TIADPALPLG