| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5374 |
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| Symbol | |
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| ID | 7975835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 79662 |
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| End bp | 81344 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795968 |
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| Product | malonate decarboxylase, alpha subunit |
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| Protein accession | YP_002947242 |
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| Protein GI | 239820057 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
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| TIGRFAM ID | [TIGR01110] malonate decarboxylase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0394956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCGCA TGAACTGGAA CACCAAGGCC GAGAATCGCG CGGCACGCCT TGCGCGGGCG
GCCAACGCGC TCGGCGCCGA CCTGGCGGGC AAGCGCGTCG CCACCGAGGC CATCGGCCAG
CTGCTGGAGG CCGTGCTGGA GCCGGGCGAC CGGGTCTGCC TCGAAGGCAA CAACCAGAAG
CAGGCCGACT TCCTCGCGCG CGCGCTGGTC GGGGTCGATC CGGCAAAGGT GCATGGCCTG
CACATGGTGC AGTCGGTGCT GGCGTTGCCG GAGCATCTGG ACCTCTTCGA GAACGGCGTG
GCCGCCCGGC TGGACTTCAG CTTCTCGGGT CCGCAAGGCG CGCGGCTGGC CAAGCTGGTG
TCGGCCGGGC GCATCGAGAT CGGCGCCATC CACACCTACC TGGAGCTGTT CGCGCGCTAC
TTCGTCGATC TCACGCCGCA GGTGGCGCTG GTGACGGCGC ACGCGGCCGA TGCCCAGGGC
AATCTCTACA CCGGCCCCAA CACCGAGGAC ACGCCCGTCA TCGTGGAGGC CACCGCCTTC
TCGGGCGGCG TCGTGATTGC CCAGGTCAAC GAGCTGGTCG ACGGCCACAC GACGACGCTG
CCGCGCATCG ACATACCGGC CGACTGGGTG AACTTCGTCG TGAAGGCGCC GCGCCCCAAT
TTCATCGAGC CGCTGTTCAC GCGCGACCCG GCGCAGATCA GCGAGGTGCA GGTGCTGATG
GCGATGATGG CCATCAAGGG CATCTATGCC GAGTACGGCG TGCAGCGCCT GAACCACGGC
ATCGGCTTCG ACACCGCGGC CATCGAGCTG CTGCTGCCCA CCTATGCCGA ATCGCTCGGC
CTCAAGGGCA AGATCGGCAA GCACTGGGCG CTGAACCCGC ACCCGGCATT GATACCGGCC
ATCGAGGCGG GCTGGGTGGA GTCGGTGCAT TCCTTCGGCT CCGAGCTGGG CATGGAGGAC
TACATCCGCG CGCGCTCCGA CGTCTTCTTC ACCGGCCCCG ACGGCAGCCT GCGCAGCAAC
CGCGCGCTGT GCCAGGCGGC GGGCCACTAC GCCTGCGACA TGTTCATCGG CTCGACCCTG
CAGATCGACC TGGACGGCAA CAGCTCCACC GCGACGCTGG GCCGCATCGC CGGCTTTGGC
GGTGCGCCCA ACATGGGCGC CGATGCGCGC GGCCGCCGCC ATGCGAGCCC GGCCTGGCTG
AAGGCCGGGC GCGAAGCGCG CGACGGCCGC AGCGGCGCGG CCGGCACGCC GCGCGGGCAG
AAGCTGGTGG TGCAGATGGT CGAGACCTTC CGCGAGCACA TGCAGCCGGC CTTCGTCGAC
CGGCTCGACG CCTGGACGCT GCAGGAGCAG GCCGGCATGG CGCTGCCGCC GATCATGATC
TACGGCGACG ATGTCACGCA CATCCTCACC GAAGAGGGCA TTGCCAACCT GCTGCTGTGC
CGCAGCGACG CGGAGCGCGA GCAGGCCATC CGCGGCGTTG CGGGCTACAC CGCGGTGGGC
CTGGCGCGCG ACCAGCGCGC GGTCGAGAAC CTGCGCGACC GCGGCGTGAT CCGCCGGCCG
CAGGACCTGG GCATCGACCC CCGCCAGGCC ACGCGCAACC TGCTGGCCGC ACGCAGCATG
CGCGACCTGG TGCGCGCCTC CGGCGGCTTG TACCAGCCGC CCAGGCGCTT CAGAAACTGG
TAG
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| Protein sequence | MDRMNWNTKA ENRAARLARA ANALGADLAG KRVATEAIGQ LLEAVLEPGD RVCLEGNNQK
QADFLARALV GVDPAKVHGL HMVQSVLALP EHLDLFENGV AARLDFSFSG PQGARLAKLV
SAGRIEIGAI HTYLELFARY FVDLTPQVAL VTAHAADAQG NLYTGPNTED TPVIVEATAF
SGGVVIAQVN ELVDGHTTTL PRIDIPADWV NFVVKAPRPN FIEPLFTRDP AQISEVQVLM
AMMAIKGIYA EYGVQRLNHG IGFDTAAIEL LLPTYAESLG LKGKIGKHWA LNPHPALIPA
IEAGWVESVH SFGSELGMED YIRARSDVFF TGPDGSLRSN RALCQAAGHY ACDMFIGSTL
QIDLDGNSST ATLGRIAGFG GAPNMGADAR GRRHASPAWL KAGREARDGR SGAAGTPRGQ
KLVVQMVETF REHMQPAFVD RLDAWTLQEQ AGMALPPIMI YGDDVTHILT EEGIANLLLC
RSDAEREQAI RGVAGYTAVG LARDQRAVEN LRDRGVIRRP QDLGIDPRQA TRNLLAARSM
RDLVRASGGL YQPPRRFRNW
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