Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5370 |
Symbol | |
ID | 7975831 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 77017 |
End bp | 77706 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644795964 |
Product | holo-ACP synthase, malonate decarboxylase-specific |
Protein accession | YP_002947238 |
Protein GI | 239820053 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03135] holo-ACP synthase, malonate decarboxylase-specific |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0548916 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCGCCA TGGTTTCGCT GCATCGCCAC CAACTCGCCT GGCTCACCCG GAGCGGGTGG GCCGCCGTGC TGGGCCGGCC ATGGGATGTG CAGGCGCGCG ACTGCCTCGC GCATTGGGCC TTGCATCGAT TGCCGCTGGT CATGACGCGC CAGCCGGCCC ATGCCGGCGC CGATGGATGG ATCGCGCTGG GTTTGCCCGC GCCTGCGTGC TGGGGCCGGC GCCGGCTTGC GCTGCAGGTG CCGCACGCTG CGGTGGACGG CCTCGGCGAG TTCCCGCGGC TCGCCGACGT GCAGCACCTG CCGCCATCGG CGCGAGCTGC CGTGCGCGAA CTGCTCGGCA GGCTCAGCCA ATGCCACGCG GCGGCACGCG TGTTCGGCAG CTACGGCTGG CAGGCGATCA GCGGTCTCGA GCATGTGCGC GCGGGCTCCG ATCTCGACTT GTCAGTCGCG GTCGAGGGAG CGGTCCATGC GGATGCCGTG GCGTGCGCGC TCGGCTTGTT CGAGGCACCG CAGCTCCGGC TGGACGGCGA GCTCATGTTC GGCGACGGCG CAGCGGTGGC CTGGCGTGAA TGGGCCGAAT GGCGCGGCGG GCGTGCGCGG GCCGTGATGG TCAAGCGGCT CGACGGCGTG CACCTGCATC GCGATGCCGC ATGGTGTGGC CATACGGAGC CGATGGAGAT CGCCGCGTGA
|
Protein sequence | MPAMVSLHRH QLAWLTRSGW AAVLGRPWDV QARDCLAHWA LHRLPLVMTR QPAHAGADGW IALGLPAPAC WGRRRLALQV PHAAVDGLGE FPRLADVQHL PPSARAAVRE LLGRLSQCHA AARVFGSYGW QAISGLEHVR AGSDLDLSVA VEGAVHADAV ACALGLFEAP QLRLDGELMF GDGAAVAWRE WAEWRGGRAR AVMVKRLDGV HLHRDAAWCG HTEPMEIAA
|
| |