| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5360 |
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| Symbol | |
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| ID | 7975821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 64592 |
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| End bp | 66061 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644795954 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002947228 |
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| Protein GI | 239820043 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.22613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCCAC GCACGCTTGC CCTGCCCCTG CTGTTCAGCC TCCTCGCAGG CTGCGCCGTG
GGGCCTGACT ATGTCCGGCC GGCCCCGGCC CTGCCCGACC GCTTCATGGG CGAGGCGGCG
CTCGGCCAGC GATCGGCCAC CGCCAACGCC GAGCTCGCGG CATGGTGGAC CGGCTTCGGC
GATGCGCAGC TGGCCGGCTA TGTCGAGCAG GCGCTGAAGC AGAACCTCGA TCTTGCGCAG
GCCGCCGCGC GCGTGGCGCA GGCCCGGGCC GGGCTCGGTG CAGCGAATGC GGCGCCGCTG
CCTTCGGGCA ACCTGGGCGC GCAAGCGGCC AGGGCCTACC AGTCGGTGGA GACGCCGCTG
GGCCAGGTGC TGAACGCGCA GCCGGGTTTC GACCGCTACG GCAGCGCCTA CGAAGCGAAC
CTCGGCGCCA GTTGGGAGCT GGACATCTTC GGCGGGCTGC GCCGGGGACG CGAGGCCGCG
CTGGCCGACT ACCAGGCCTC GGAGGCCGGC GCGGCCGCCA CGCGCCTGGC CGTGGCCGCG
CAGACCGCCG ACATCTACAT CACATTGCGC GGCCTGCAGG CCCGCCTGGA CATTGCGCGC
CGGCAGGTCG CCACGCAGCA GGACCTGCTC GCGAAGATCG GCCTGCTCCA CGGCAAAGGG
CTGGCCACCG AGCTCCAGCT GCACCAGGCC GAGGGCGCGC TGGCGCAGGT TCGGGCGTCG
GTGCCTGCGC TCGAGGCCGG CGAGGCCGCG GCCATGAACG CGCTCGACGT GATGCTGGGC
ACCGCGCCGG GCGCGCACCG CGCGGAACTG GCGGCGGCCG CGGCCATTCC CGTTGCGCCC
GGCATCGGCG CCACCGGCTC GCCCGCGGAG CTGCTGCGGC GCCGGCCCGA CCTGATCGCC
GCCGAGCGGC GCCTGGCGGC ATCGAACGCC CGCATCGGCG TGGCCGTGGC CGAGTACTAC
CCGAAGCTGT CGCTCGCGGG AACCATCGGC AGCGCCACGT CGGTGGCCAG CGGCAACCTG
TTCACCGGCG GCGCGAGCCA GGCCGCGGCC CTGCTCGGCC TGCGCTGGCG GCTGTTCGAC
TTTGCGCGCA TCGATGCGCA GATCGAGCTC GCCAAGGGGC AGGACGCGGA GCTGCTCGCG
GCCTACCGGC TTGCCGCGCT GCGTGCCACC GAAGACGTGG AGAACGCCTT CTCGGCCCTG
GTCAAGCGCG AAGAGCAAGC CGCGCTGCTC GCGCAGGGTG AGGCCTCATT GGGCCGTGCG
CGCGGCGCGT CGTTCGCGGC CTACCAGCGC GGCGTGGTCA GCCTGATCGA AGTGCTCCAG
GCCGACGAGA GCATGCTGCG CGTGGCCGAT GCCAGGGCGC AGGCGCAGAC GGAATCGGCA
CGCGCGGCGG TCGGTGCATT CAAGGCGCTG GGTGGCGGCT GGCAGGCCGA GCCCATCCGG
GCGGCGGCCA TCGAACCGCG TCGGGATTGA
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| Protein sequence | MSPRTLALPL LFSLLAGCAV GPDYVRPAPA LPDRFMGEAA LGQRSATANA ELAAWWTGFG
DAQLAGYVEQ ALKQNLDLAQ AAARVAQARA GLGAANAAPL PSGNLGAQAA RAYQSVETPL
GQVLNAQPGF DRYGSAYEAN LGASWELDIF GGLRRGREAA LADYQASEAG AAATRLAVAA
QTADIYITLR GLQARLDIAR RQVATQQDLL AKIGLLHGKG LATELQLHQA EGALAQVRAS
VPALEAGEAA AMNALDVMLG TAPGAHRAEL AAAAAIPVAP GIGATGSPAE LLRRRPDLIA
AERRLAASNA RIGVAVAEYY PKLSLAGTIG SATSVASGNL FTGGASQAAA LLGLRWRLFD
FARIDAQIEL AKGQDAELLA AYRLAALRAT EDVENAFSAL VKREEQAALL AQGEASLGRA
RGASFAAYQR GVVSLIEVLQ ADESMLRVAD ARAQAQTESA RAAVGAFKAL GGGWQAEPIR
AAAIEPRRD
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