| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5356 |
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| Symbol | |
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| ID | 7975817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 60182 |
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| End bp | 61960 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795950 |
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| Product | acyl-CoA dehydrogenase domain protein |
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| Protein accession | YP_002947224 |
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| Protein GI | 239820039 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.253086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTACC AGATCCCGAT GCGCGACATC CAGTTCGTCT TGCACGAACT GCTCCAGGTG
CCGGCCATGC TGCAGGACTG CGGCCAGCCC GACCTCGACG CCGAAACCAT CGACCAGGTG
CTCGCCGCGG CCGGCCAGTT CGCCGCCGAG GTGATTGCGC CGCTCAACGC AGCAGGGGAC
GAACACGGCT GCAGCATGCC TTCGCCCGGT GTGGTGCAGA CGCCGCCGGG CTTCAAGAAG
GCCTACGACG AATTCACGAA GAACGGCTGG GCCGGATTGG GGTGCAGCCC CGAGTTCGGC
GGCCAGGGCT TTCCTTCGGT CGTGGCCAAC GCGGTCTACG AAGTGTTCGG CGGCGCGAAC
ATGGCGTGGT CGTCCTATCC GGGCATGTCG CATGCCACCT ACGTGAACGT GTCGGCCAAC
GGATCGGAGG CGCAGAAGGC GCTCTACCTG CCGAAGATCG CCTCGGGCGA GTGGGCCGGC
ACCATGTGCC TGACCGAGCC CAACGCGGGC ACCGACCTGG GCCTGATGCG CACCCGCGCC
GTGGCGCAAC CCGACGGCAG CTACAGCATC ACCGGCAGCA AGATCTTCAT CTCGGGCGGC
GAGCAGGACC TGACCGAGAA CATCATGCAC CTGGTGCTCG CGCGCATGCC GGATGCGCCG
CCGGGCGTGA AGGGCATTTC CCTTTTCATC GTGCCGAAAT TCATCCCCGA TGCAAACGGT
GCGGCCGGCG CCCGCAACGC GGTGGTCTGC GGCTCCATCG AGCACAAGCT GGGCATCCAC
GGCAACTCGA CCTGCACCAT CAACTTCGAC GGCGCAACCG GCTGGCTGCT GGGCGCGCCC
CACAAGGGAC TCGCGGGCAT GTTCGTGCAG ATGAACCACA TGCGCGTGCT GGTCGGCATG
ATCGCCATCG GCCTCATGGA AGCGGCCTAC CAGAAAGCGC TGGCCTATGC GAAGGAGCGC
CTGCAGGGCC GCGCGATCGG TGCAAGACCC TCCGGCGATG CGGTCGATCC GATCATCGGG
CATGCCGACG TGCGCCGCAT GCTGCTCACG CAGAAGGCGA ACATCGAGGG CGCGCGTGCA
CTGGCGCTCT GGACCTCGCA ACTGAGCGAT GTGCAGCGCC TTCATCCCGA CCCCGCCAAG
CGCAACGAGA CGGCCGAACT GCTGGGCCTG CTGACCCCAC TCGTGAAGGC GCTGTCCAGC
GACCTCGCAG TGGAATGCAC GCTGCTCGCG ATGCAGGTGT TCGGCGGGCA CGGCTACATC
CGCGAGAACG GCGTCGAGCA GCACCTGCGG GACGTGCGCA TCGTGGGCCT TTATGAGGGA
ACGAACGGCG TGCAGGCCAT GGACCTGCTC GGGCGCAAGG TGCTGGCCGA CCAGGGCCGG
CAGATGGGCG CCTTCCTCGA CATGGCCGGC GCATTCGCCG AGACCTGCAG CCCGCGCGAG
GCGATGCGCG AATTCACGCA GCCGCTCATC GAGCTGGCCG CCGAGATCAG GCAGCTCACG
GGCGAGCTGG TGGCCGCGTC GGCACGAGAC CCGCATGCGG CGGGCGCGGC CGCAGTGCCC
TACCTGCGCC TGGTCGGGCA CCTGGCGCTT GCCTGGACCT GGGCGCGCAT GACGGAGGTG
GCGTTCAAGA ACATTGACTC CACCGATCCG ATCTATGCCT CGAAGATCGC CACGGCCCGC
TTCTACTTCC AGCGGCTGCT GCCGCAGGCC GCGGGGCTCT GCCAGGAAAT CCGGGCCGGG
TCATCCGCAT TGATGGAACC GGCCGTCGAG CTTTTCTAG
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| Protein sequence | MTYQIPMRDI QFVLHELLQV PAMLQDCGQP DLDAETIDQV LAAAGQFAAE VIAPLNAAGD
EHGCSMPSPG VVQTPPGFKK AYDEFTKNGW AGLGCSPEFG GQGFPSVVAN AVYEVFGGAN
MAWSSYPGMS HATYVNVSAN GSEAQKALYL PKIASGEWAG TMCLTEPNAG TDLGLMRTRA
VAQPDGSYSI TGSKIFISGG EQDLTENIMH LVLARMPDAP PGVKGISLFI VPKFIPDANG
AAGARNAVVC GSIEHKLGIH GNSTCTINFD GATGWLLGAP HKGLAGMFVQ MNHMRVLVGM
IAIGLMEAAY QKALAYAKER LQGRAIGARP SGDAVDPIIG HADVRRMLLT QKANIEGARA
LALWTSQLSD VQRLHPDPAK RNETAELLGL LTPLVKALSS DLAVECTLLA MQVFGGHGYI
RENGVEQHLR DVRIVGLYEG TNGVQAMDLL GRKVLADQGR QMGAFLDMAG AFAETCSPRE
AMREFTQPLI ELAAEIRQLT GELVAASARD PHAAGAAAVP YLRLVGHLAL AWTWARMTEV
AFKNIDSTDP IYASKIATAR FYFQRLLPQA AGLCQEIRAG SSALMEPAVE LF
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