Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5352 |
Symbol | |
ID | 7975813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 55991 |
End bp | 57631 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795946 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_002947220 |
Protein GI | 239820035 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.89737 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATCAAA GAATCTGGCA TGCGTCCTAC CCGGCAGGAC TGCCCCGCGA GCTCGTGTAC GGCGAGCACG ACACCCTCGC CACCCTGTTC GAAGGCGCCT TCGCTCGCAA CGCCAGCCGG CCGGCCGTGA CCTGCAACGG CGAATCGCTG AGCTTCGCCG AGCTCGAACA AGCATCGGCT CGCTTTGCGG CATTCCTGCA GTCGGCAGGT CTGCAGCCCG GCGACCGCGT GGCGCTGCTG CTGCCGAACC ACCTTCTCTA TCCCGTCGCC TTGGCTGCGA TCGCGCGCGC AGGCTTCGTG GGGGTGACGA TGAACCCGCT CTACACAGCC CGCGAGGTGG CCTACCAGCT GGCGGATTCC AGCGCGGTGG CGCTGGTGGT TGCCGATCCG TTCGCGGGAC TCGCGGCCGA GGCCATCGAG CGGACCGAAG TCCGGCACGT CGTCACCGTG CCGATGCAGG ACCTGAGGCA ATCGCTGCTC GCGCCCGCCG GCGACCGGCC GGTGCTGGCA CGCAGCTCCG ATGTGCATCT TGTTCCGCTG CACACCGCCA TCGCATCGGT GCAGGCTGCA GGCTTCAGCG CCCCGCAGGT GCGCCCCTCC GATCTCGCAT TCCTGCAATA CACGGGCGGC ACGACCGGCG TGTCGAAGGG CGCCTGCCTC ACGCATCGCA ACGTCCTGGT GAGTGTGCTG CAGATGCAGT CCTGGCTGCG GCTGAACCTC GAGATCCAGA ACTTCGAGCT GGTCACGCCG CTGCCGCTGT ACCACATCTT CCCGCTCGGC ATGGCGCTGA TGGCGCTGGC GAGCGGCGGA CACAACCGGC TCGTCATGAA TCCGCGCGAC ATCCAGGCGC TGTGCGCCGA ATTGCGGCGG GCGCCTTTCG ACGTGCTGAT CGGCGTCAAC ACCATGTTCA ACGGCATGGT GAACCTGCCC GAACTGTCGT CGGTCGATTT CTCGCGCTGC GGCATGGTCA TCGGCGCTGG CGCCTCGATC CAGGCGGCGG TCGCGCGCAG GTGGGAGGCG GCCGGCGGGC CGCCGATCAC CGAGGCCTAC GGGCTCACGG AGACATCGCC CAGCGCCACC TTCAATGCGC CGGGCTGCAA CGGCACCATC GGCGTTCCGG TGCCCTCCAC CGACGTGATG ATCGTCGACG ACGCGGGCGG GCCGGTGGCG CAGGGCGCGC CCGGCGAGCT GCTCATCAAG GGGCCGCAGG TGTTTGCCGG CTACTGGAAG CGCGAGGAAG AAACGCGCAT GGCATTCACC AGCGATGGCT GGTTCCGCAC GGGCGATGTC GTCACCATGG ATGCACAGGG GCTGATGACC ATCGTCGACC GCAAGAAGGA CATGATCCTG GTGTCCGGAT TCAACGTGTA TCCGAACGAG ATCGAGGGCG TGGTCGCGCT GCATCCGGAC GTGCTGGAGT GCGCCTGCGT CGGCGTGCCC GACGAGCGCT CCGGCGAAGT CCCCCACCTG TTCGTCGTGC GCCGCTCGCC GGGCCTGCAG GCGGACCAGG TCGAATCGCA CTGCCGCGAG CTCCTGGCGC CCTACAAGGT GCCTCGGCGC ATCACCTTTC TCGAGGCACT GCCCAAATCG ACCGTGGGCA AGATCCTGCG CAAGGAACTG CGGGCCCCGG CGGCGGCCTG A
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Protein sequence | MDQRIWHASY PAGLPRELVY GEHDTLATLF EGAFARNASR PAVTCNGESL SFAELEQASA RFAAFLQSAG LQPGDRVALL LPNHLLYPVA LAAIARAGFV GVTMNPLYTA REVAYQLADS SAVALVVADP FAGLAAEAIE RTEVRHVVTV PMQDLRQSLL APAGDRPVLA RSSDVHLVPL HTAIASVQAA GFSAPQVRPS DLAFLQYTGG TTGVSKGACL THRNVLVSVL QMQSWLRLNL EIQNFELVTP LPLYHIFPLG MALMALASGG HNRLVMNPRD IQALCAELRR APFDVLIGVN TMFNGMVNLP ELSSVDFSRC GMVIGAGASI QAAVARRWEA AGGPPITEAY GLTETSPSAT FNAPGCNGTI GVPVPSTDVM IVDDAGGPVA QGAPGELLIK GPQVFAGYWK REEETRMAFT SDGWFRTGDV VTMDAQGLMT IVDRKKDMIL VSGFNVYPNE IEGVVALHPD VLECACVGVP DERSGEVPHL FVVRRSPGLQ ADQVESHCRE LLAPYKVPRR ITFLEALPKS TVGKILRKEL RAPAAA
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