Gene Vapar_5349 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5349 
Symbol 
ID7975810 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp52869 
End bp54134 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content65% 
IMG OID644795943 
ProductRieske (2Fe-2S) domain protein 
Protein accessionYP_002947217 
Protein GI239820032 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0454164 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGACA CATCCGCCGT CTTTCCGCAG CAGATCCGCT GGGAAGACAA GGGCACGAGC 
CGCATCCCCT TCATGGCCTA CACCGACGCC GACCAGCACC GGCGCGAGCT CGAGCGCCTC
TTCTACCGGG GCCACTGGTG CTACGTGGGC CTGGAGGCCG AGATTCCCGA GGTCGGCGAT
TTCAAGCGCA CGGTGATCGG CGAGCGCTCG GTGATCATGG TCCGCGATGC CGAGGATTCC
ATCAGCGTGG TGGAAAACGT GTGCGCGCAC CGGGGCATGC AGTTCTGCCG CGAGCGGCAC
GGCAATCGCA AGGCCGGCGG CTTCACCTGC CCGTACCACC AGTGGAACTA TTCGCTCGGC
GGCGACCTGC AGGGGGTGCC TTTCCGCCGC GGCGTCAAGC AGGACGGCAA GGTCAACGGC
GGGATGCCGG CCGACTTCAA GCCGGCCGAC CATGGCCTCA ACAAGCTCAA GGTTGCGACG
CGCGGCGGCG TCGTGTTCGC GTCCTTCGAT GCGGAGGTGG AGTCGCTCGA GGACTTCATG
GGCCCGGAGA TCCTGGGCTA CTTCGACCGG CTCTTCAACG GCCGCAAGCT CACGATCCTC
GGCTACAACC GCCAGCGCAT TCCCGGCAAC TGGAAGCTGA TGCAGGAGAA CATCAAGGAC
CCGTACCATC CGGGCCTGCT GCACACGTGG TTCGTCACCT TTGGCCTCTG GCGCGCCGAC
AACAAGTCGG AGCTGAAGAT GGACCGCCAT CACCGGCATG CCGCGATGAT CTCGACCCGC
GGCGCGAGCG GCAAGGCGGA CCAGGTCACC CAGGTGTCGA GCTTCAAGGA AAGCATGAAG
CTCAACGACG ACCGCTTCCT GGACATCGTG CCCGAGCCGT GGTGGCGCGG CCCGACGGCG
GTGATGATGA CGCTGTTCCC GAGCGTGATC TTCCAGCAGC AGGTCAACAG CGTCTCGACC
CGGCACATCC AGCCGAGCGG CCCCGGCGCC TTCGATTTCG TCTGGACGCA CTTCGGCTTC
GAGGACGACG ACGATGCGAT GACGCAGCGG CGATTGCGCC AGGCCAACCT CTTCGGGCCG
GCGGGCTTCG TCTCGGCCGA CGACGGGGAG GTGATCGAAC TTTCGCAGAA AGGCTTCGAG
CAGAAGCCCT TCCACCGCAC GCTCGCCGAA CTCGGCGGCC GCGAAGTCGG CGACACGGAC
CACATGGTGA CCGAGACGCT GATACGCGGC ATGTACGAAT ACTGGCGCAA GGTGATGGAG
GCTTGA
 
Protein sequence
MDDTSAVFPQ QIRWEDKGTS RIPFMAYTDA DQHRRELERL FYRGHWCYVG LEAEIPEVGD 
FKRTVIGERS VIMVRDAEDS ISVVENVCAH RGMQFCRERH GNRKAGGFTC PYHQWNYSLG
GDLQGVPFRR GVKQDGKVNG GMPADFKPAD HGLNKLKVAT RGGVVFASFD AEVESLEDFM
GPEILGYFDR LFNGRKLTIL GYNRQRIPGN WKLMQENIKD PYHPGLLHTW FVTFGLWRAD
NKSELKMDRH HRHAAMISTR GASGKADQVT QVSSFKESMK LNDDRFLDIV PEPWWRGPTA
VMMTLFPSVI FQQQVNSVST RHIQPSGPGA FDFVWTHFGF EDDDDAMTQR RLRQANLFGP
AGFVSADDGE VIELSQKGFE QKPFHRTLAE LGGREVGDTD HMVTETLIRG MYEYWRKVME
A