Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5349 |
Symbol | |
ID | 7975810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 52869 |
End bp | 54134 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795943 |
Product | Rieske (2Fe-2S) domain protein |
Protein accession | YP_002947217 |
Protein GI | 239820032 |
COG category | [P] Inorganic ion transport and metabolism [R] General function prediction only |
COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0454164 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGACA CATCCGCCGT CTTTCCGCAG CAGATCCGCT GGGAAGACAA GGGCACGAGC CGCATCCCCT TCATGGCCTA CACCGACGCC GACCAGCACC GGCGCGAGCT CGAGCGCCTC TTCTACCGGG GCCACTGGTG CTACGTGGGC CTGGAGGCCG AGATTCCCGA GGTCGGCGAT TTCAAGCGCA CGGTGATCGG CGAGCGCTCG GTGATCATGG TCCGCGATGC CGAGGATTCC ATCAGCGTGG TGGAAAACGT GTGCGCGCAC CGGGGCATGC AGTTCTGCCG CGAGCGGCAC GGCAATCGCA AGGCCGGCGG CTTCACCTGC CCGTACCACC AGTGGAACTA TTCGCTCGGC GGCGACCTGC AGGGGGTGCC TTTCCGCCGC GGCGTCAAGC AGGACGGCAA GGTCAACGGC GGGATGCCGG CCGACTTCAA GCCGGCCGAC CATGGCCTCA ACAAGCTCAA GGTTGCGACG CGCGGCGGCG TCGTGTTCGC GTCCTTCGAT GCGGAGGTGG AGTCGCTCGA GGACTTCATG GGCCCGGAGA TCCTGGGCTA CTTCGACCGG CTCTTCAACG GCCGCAAGCT CACGATCCTC GGCTACAACC GCCAGCGCAT TCCCGGCAAC TGGAAGCTGA TGCAGGAGAA CATCAAGGAC CCGTACCATC CGGGCCTGCT GCACACGTGG TTCGTCACCT TTGGCCTCTG GCGCGCCGAC AACAAGTCGG AGCTGAAGAT GGACCGCCAT CACCGGCATG CCGCGATGAT CTCGACCCGC GGCGCGAGCG GCAAGGCGGA CCAGGTCACC CAGGTGTCGA GCTTCAAGGA AAGCATGAAG CTCAACGACG ACCGCTTCCT GGACATCGTG CCCGAGCCGT GGTGGCGCGG CCCGACGGCG GTGATGATGA CGCTGTTCCC GAGCGTGATC TTCCAGCAGC AGGTCAACAG CGTCTCGACC CGGCACATCC AGCCGAGCGG CCCCGGCGCC TTCGATTTCG TCTGGACGCA CTTCGGCTTC GAGGACGACG ACGATGCGAT GACGCAGCGG CGATTGCGCC AGGCCAACCT CTTCGGGCCG GCGGGCTTCG TCTCGGCCGA CGACGGGGAG GTGATCGAAC TTTCGCAGAA AGGCTTCGAG CAGAAGCCCT TCCACCGCAC GCTCGCCGAA CTCGGCGGCC GCGAAGTCGG CGACACGGAC CACATGGTGA CCGAGACGCT GATACGCGGC ATGTACGAAT ACTGGCGCAA GGTGATGGAG GCTTGA
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Protein sequence | MDDTSAVFPQ QIRWEDKGTS RIPFMAYTDA DQHRRELERL FYRGHWCYVG LEAEIPEVGD FKRTVIGERS VIMVRDAEDS ISVVENVCAH RGMQFCRERH GNRKAGGFTC PYHQWNYSLG GDLQGVPFRR GVKQDGKVNG GMPADFKPAD HGLNKLKVAT RGGVVFASFD AEVESLEDFM GPEILGYFDR LFNGRKLTIL GYNRQRIPGN WKLMQENIKD PYHPGLLHTW FVTFGLWRAD NKSELKMDRH HRHAAMISTR GASGKADQVT QVSSFKESMK LNDDRFLDIV PEPWWRGPTA VMMTLFPSVI FQQQVNSVST RHIQPSGPGA FDFVWTHFGF EDDDDAMTQR RLRQANLFGP AGFVSADDGE VIELSQKGFE QKPFHRTLAE LGGREVGDTD HMVTETLIRG MYEYWRKVME A
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