| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5347 |
|---|
| Symbol | |
|---|
| ID | 7975808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 52071 |
|---|
| End bp | 52388 |
|---|
| Gene Length | 318 bp |
|---|
| Protein Length | 105 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795941 |
|---|
| Product | Rieske (2Fe-2S) domain protein |
|---|
| Protein accession | YP_002947215 |
|---|
| Protein GI | 239820030 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.210101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATT CCCAATGGAC CGAGGCCGCA GCGGTCGACG AAGTTCCGAC CGACGACGTC
GTCGGCATGC AGGTCGGCGG GCGCGACATC GCGCTGTACA ACGTGGAGGG CCAGATCTAC
GCGACCGACA ACGTCTGTAC CCACGGCCAT GCGCGCCTGT GCGAGGGCTT TCTCGAAGGG
CACGAGATCG AGTGCCCGCT GCACCAGGGC AAGTTCGACG TGCGCAATGG CAAGCCGACC
TGTGCGCCGG TGACCGAGGC GATCCGCGCG TACCCCGTGA GGATCGAGGC GGGCCGCGTG
TTCCTCTCGC TCGACTGA
|
|---|
| Protein sequence | MSDSQWTEAA AVDEVPTDDV VGMQVGGRDI ALYNVEGQIY ATDNVCTHGH ARLCEGFLEG
HEIECPLHQG KFDVRNGKPT CAPVTEAIRA YPVRIEAGRV FLSLD
|
|---|
| |