| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5344 |
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| Symbol | |
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| ID | 7975805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 47640 |
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| End bp | 49475 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795938 |
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| Product | histidine kinase |
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| Protein accession | YP_002947212 |
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| Protein GI | 239820027 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCAC GGGAGCCGGC CCGGCGCTTC GACTTGCCTT CCCGCAGCCC GAGACGGTGG
CGCGGCCTGC CGCGCTGGTG CGGCGCACTG GCGCTCGTGG CCGCGGCCGC CTTTGCGGGG
CACCACTTCG CCATGCAGAA CGGCCTCGCG CGGCTGCGCG AGGCAGCCGA CCACCGGCTC
GACATGCTCG CCACCGGGCT CGATGCCGAC CTGGCTCGTT TCGAGTACCT GCCGGCGCTG
CTGGAGATGA CGCCCATCGT CCCCGGGCTG CTCGGCACGC CCTCGGACGC GCCGCTGCGC
GATGCGGTCA ACCGCTACCT CGACGGCGTC AACGCCGCCG CCGGCGCGGA GATGCTCTAC
GTGCTGGATG CCGCCGGCAC CTCGCTGGCG GCTTCCGACT GGAACCGGCC CGGCACCACC
GTCGGCCAGG ACCTGTCGTT CCGGCCCTAC GTGATCGATG CGCTGGGGCA GGGCAAGGGC
CGCTTCTACG GCGTCGGCAT CACCAGCCGC AAGCCCGGCT ACTACCTCTC GTATGCCTTG
CGCCGCGGCC AGCCCACGCG CGGCGTGGTC GCCGTGAAGG TCAACCTGGA AGAAACCGAA
CGCGCCTGGC GCAAGCTGCC GGGCGACGTG GCGCTGATCG ACCAGCGCGG CGTGGTGATC
CTCGCCACCC GCGAAGAGCT CAAGTTCCGG CCGCTGCTGC CGCTCGACGC CGTGCAGCGG
GCCGAGGTGC AGCGCTCGCG CCCCTACGGC GAGGCCGGCC TGCAGCCGCT GCAATGGACG
CTGAAGCAGA CGCTGGCGCG CGATGTGAAG GTGATCGCGC TCGACGGCGT CGACCAGCTG
GCCTCGACGC GTTCGCTGCG CGGTGCGCCG TGGCAGCTGA TGGCGCTCGA CGACCTGGCG
CCGGTGCGCG TGGGCGCGCG CAACGCGGCC ATCACCGCGA GCCTGGCAAT GGCGGTGCTG
CTGCTGATGG CCGTCACGCT GTGGCAGCGC CGCCGCGCCG TGCGGCAGAA GCTGGCCAAC
CAGGCTGCGC TGCAGGCGGC GCACGACACG CTCGAATCGA CCGTGGTGGC GCGCACCGCG
CAGCTGCGCG CCGCCCAGGG CGAGCTGGTG CATGCCGGCA AGATGGCGGC GCTGGGCCAG
ATGTCGGCCG GCGTGGTGCA CGAGCTGAAC CAGCCGCTCA CCGCGATGCG CACGCTCTCG
GAGAGCGCCG CCATCCTGCT CGACAAGAAC CGCCTGGACG ACGTGCGCGG CAACCTGCAG
CGCATCCGGG GCATGGTCGA CCGCCTGGCG CGCCTGACCT CGCAGCTCAA GACCTTCGCG
CACAAGAACG AGCTTCCGCT CGCGGCAGTG CTGATGGCGC GAGCCGTGGC CGACGCGCAG
GCCATCGTGG CCGAGGCCAC GAAGAAGAAC GGCGTCGCCA TCGAGGTCGA CGTGCAGCCC
GCGAGCCTGA GCGTGATGGC CGAAGAGGCC GCGCTGGGCA GCGTGCTCGT CAACCTGATG
CGCAACGCCA TCGACGCCAT GCAGGCTTCG CCCCGGCGCA GGCTGCGGCT CGAGGCGCGG
CCGCAGGAGG GCCGGGTGAT CCTGCGCGTG AGCGACACCG GGCCGGGCAT TCCACCCGAC
ATCCTGCCGC GCCTGTTCGA GCCCTTCGTC TCCAGCAAGC CGGCGGGCGC GGGCCTCGGG
CTCGGGCTCG CGATCTCGGC ACAATTGGTG CGGGCCATGG ACGGCACGCT GCGTGCGGCC
AACCTGCCGG AAGGCGGTGC CTGCTTTGTC GCCGACCTGC CCGCCGCCGT TTACGCCATC
CCTATTCCCG CCCTTACAGG AGTGATCAAC AAGTGA
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| Protein sequence | MIPREPARRF DLPSRSPRRW RGLPRWCGAL ALVAAAAFAG HHFAMQNGLA RLREAADHRL
DMLATGLDAD LARFEYLPAL LEMTPIVPGL LGTPSDAPLR DAVNRYLDGV NAAAGAEMLY
VLDAAGTSLA ASDWNRPGTT VGQDLSFRPY VIDALGQGKG RFYGVGITSR KPGYYLSYAL
RRGQPTRGVV AVKVNLEETE RAWRKLPGDV ALIDQRGVVI LATREELKFR PLLPLDAVQR
AEVQRSRPYG EAGLQPLQWT LKQTLARDVK VIALDGVDQL ASTRSLRGAP WQLMALDDLA
PVRVGARNAA ITASLAMAVL LLMAVTLWQR RRAVRQKLAN QAALQAAHDT LESTVVARTA
QLRAAQGELV HAGKMAALGQ MSAGVVHELN QPLTAMRTLS ESAAILLDKN RLDDVRGNLQ
RIRGMVDRLA RLTSQLKTFA HKNELPLAAV LMARAVADAQ AIVAEATKKN GVAIEVDVQP
ASLSVMAEEA ALGSVLVNLM RNAIDAMQAS PRRRLRLEAR PQEGRVILRV SDTGPGIPPD
ILPRLFEPFV SSKPAGAGLG LGLAISAQLV RAMDGTLRAA NLPEGGACFV ADLPAAVYAI
PIPALTGVIN K
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