| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5330 |
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| Symbol | |
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| ID | 7975791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 29001 |
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| End bp | 30029 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644795924 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002947198 |
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| Protein GI | 239820013 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATTC AACGCATTTC CCTGCCGACC CGCCGCAGCT TCGCCGTGGC GGCGATTACG
GTGCTCTCGT TCGCTTCGAC GGGCGCATTC GCCGAGATCA AGGCCAAGCT CGGCCACGCT
ATGCCCGACA GCCATCCGCA GGCGGTCGCA ATGAAGAAGT TCGCCGAACT GGCGGCTACC
TACACGAAGG GCAACGTCAA GATCCAGACC TACTCGAGCG GCGTGCTGGG CAGCGACGAG
AAGGAACTGC AGGCCGTGCA GGCCGGCACG CAAGAGTTTT ACATCGGCAC GCTCGCACCA
CTGTCCACGC GCATCAAGGA AGTGCAGGTC TGGGACTTGC CTTTCATGTT CCAGAACGAC
CGCGAGGCGT ATGCGTTGCT CGACGGCCCT TCGTCGAAGA AGATCTTCGA GAAGGTCGAG
CCGGCCGGCC TTGTCGGCCT GACTTGGACG GGGATGGGCT TTCGCAATCT TTCCAACAGC
AAGCACAGCG TCAACAAGCT CGAAGACGTC AGTGGGCTGA AGGTGCGCGT CATGGCCAAC
CCCGTCGCGC TCGACACCTG GAAGACGATC GGCGCCAACG CGGTGCCGAT GGCATTCGCC
GAGGTCTTTC CGGCACTCGA GATCAAGGCG CTGGACGGCC AAGAGAATCC GCTGCTGCAC
ATGTACGCCA ACAAGATGCA GGAGGTGCAG AAGTACATCT CGGTGACCAA TCACGTCTAC
ACGCCGGTGG CGCTGGTGGC TTCGAAGAAG TTCTGGGACA CCCTGCCGCC CGCCGACAAG
GAAGGCATCA GGAAAGCTGC CGTTGAAGCC GGCCTCTACC AGCGCAAGCT GCTCGACGAG
GGCAACGCCG ACGTCATCGC CAAGTTCAAG GGCGAGGGGG TGACCGTCAA CGTGATGAGC
CCGGCCGAGC TCGCCCGCAT CCAGGACAAG GTCAAGCCGG TCGTCGCCAA GTATTCGGCA
GCCATCGGCG ATGACTTCGT CAAGGGCTTC TACGACGAGA TCGCCAAGGC GCGAGCAGCG
GCGAAGTAG
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| Protein sequence | MNIQRISLPT RRSFAVAAIT VLSFASTGAF AEIKAKLGHA MPDSHPQAVA MKKFAELAAT
YTKGNVKIQT YSSGVLGSDE KELQAVQAGT QEFYIGTLAP LSTRIKEVQV WDLPFMFQND
REAYALLDGP SSKKIFEKVE PAGLVGLTWT GMGFRNLSNS KHSVNKLEDV SGLKVRVMAN
PVALDTWKTI GANAVPMAFA EVFPALEIKA LDGQENPLLH MYANKMQEVQ KYISVTNHVY
TPVALVASKK FWDTLPPADK EGIRKAAVEA GLYQRKLLDE GNADVIAKFK GEGVTVNVMS
PAELARIQDK VKPVVAKYSA AIGDDFVKGF YDEIAKARAA AK
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