| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5326 |
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| Symbol | |
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| ID | 7975613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 24710 |
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| End bp | 25480 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795920 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947194 |
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| Protein GI | 239820009 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCATC CCCTCTTCAG TCTCGTCGGC CGCACCGCGC TGGTGACCGG CTCCTCGCGC
GGTCTCGGAT ACGCCATTGC CGAGGCGCTT GCGCAGGCCG GCGCCAGGGT CGTGCTCAAC
GGCGTCGATG CACAGCGCCT TGCCCGCGGC GCTGAGGCAT TGCGGGCCAA GGGCCATGGC
GTGGAAATGG CCGCCTTCGA CGTGACCGAT GAAGCCGCCG TGAGCGATGC TTTCGCCCGT
CTCGACGCCG CGGGCCTTGC GATCGACATC CTGGTCAACA ACGCGGGCAT CCAGTTGCGC
AAACCGCTGG TCGAACTCTC GTTGCCGGAA TGGGACAAGG TGCTGAGCAC CAATCTGACA
AGTGCCTTCC TGGTCGGCCG CGAAGCCGCG CGCCGGATGA TCGAGCGCAA GAGCGGCGGC
AAGATCATCA ACATCGGTTC GCTCACCAGC GAGGCCGCAC GCGCAACCGT CGCGCCCTAC
ACCGCAGCCA AAGGCGGCAT CAAGATGCTC ACGCGCGCCA TGACGGCCGA GTGGGCGGAG
CACGGCATCC AGGCCAATGC AATCGGCCCG GGCTACATGG CCACGGAGAT GAACACTGCG
CTGATCCAGA ACCCGGCCTT CGACGGCTGG GTCAAGTCGC GCACGCCGGC GCGCCGCTGG
GGGCGGCCGG ACGAGCTCGC CGGCACGGCG ATCTATCTCG CATCGTCGGC ATCCGACTAC
GTCAACGGCC AGATCTTCTA TGTCGACGGC GGCATGCTCG CCGTGCTGTA G
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| Protein sequence | MSHPLFSLVG RTALVTGSSR GLGYAIAEAL AQAGARVVLN GVDAQRLARG AEALRAKGHG
VEMAAFDVTD EAAVSDAFAR LDAAGLAIDI LVNNAGIQLR KPLVELSLPE WDKVLSTNLT
SAFLVGREAA RRMIERKSGG KIINIGSLTS EAARATVAPY TAAKGGIKML TRAMTAEWAE
HGIQANAIGP GYMATEMNTA LIQNPAFDGW VKSRTPARRW GRPDELAGTA IYLASSASDY
VNGQIFYVDG GMLAVL
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