| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5322 |
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| Symbol | |
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| ID | 7975609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 20962 |
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| End bp | 21738 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795916 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002947190 |
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| Protein GI | 239820005 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTGA ATCTGAAGGA CAAGGTGGTG CTGGTCACCG GCGGCGGCAG CGGCATTGGC
GCGGCCATTT CGCTCACGCT CGCGCGCGAA GGCGCGGTGC CCGTGATCTG CGGGAAGAAC
CCGCTGGACG CGGCGTTCGA GCAGGAGCTG CACGCGCTGC AGCCGCGGGC GCGGTTCCTT
CAGTTCGATC TGATGGAAGA GGCCGCCTGC GGCCAAGCCG TCGAGAGCAC CGCCGCGGAG
TTCGGGCGCA TCGACGGGCT GGTCAACAAC GCGGGCGTGA ACGACAGCGT GGGGCTCGAA
GCGGGGCGCG AGGCATTCAT CGCATCGCTG GAGCGGAACC TCGTCCACTA CTATGTGATG
GCGCATTTCT GCCTGCCGCA CCTGAAGGCC AGCCGCGGCG CGATCGTCAA CATCTCCTCG
AAGACCGCCC TCACGGGGCA GGGCAATACC AGCGGCTACA CCGCGGCCAA GGGCGCGCAG
CTGTCGCTGA CGCGCGAGTG GGCGGCCTCC TTGCTGGAGG AGGGCGTGCG CATCAACGCG
GTGATACCGG CCGAGGTGAT GACGCCGCTC TACCAGCGCT GGATCTCGGC CTTCGACGAG
CCCGACCGCA AGCTCGCCGC CATCACCGAC AAGATCCCGC TCGGCCGCCG CATGACCACG
CCGCAGGAGA TTGCGAACAC CGTGGTGTTC CTGCTCTCCG AAAAGGCCTC GCACACGACG
GGGCAGTGGG TGTTCGTGGA CGGCGGCTAC ACGCACCTGG ACCGGGCGCT GACCTGA
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| Protein sequence | MDLNLKDKVV LVTGGGSGIG AAISLTLARE GAVPVICGKN PLDAAFEQEL HALQPRARFL
QFDLMEEAAC GQAVESTAAE FGRIDGLVNN AGVNDSVGLE AGREAFIASL ERNLVHYYVM
AHFCLPHLKA SRGAIVNISS KTALTGQGNT SGYTAAKGAQ LSLTREWAAS LLEEGVRINA
VIPAEVMTPL YQRWISAFDE PDRKLAAITD KIPLGRRMTT PQEIANTVVF LLSEKASHTT
GQWVFVDGGY THLDRALT
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