| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5320 |
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| Symbol | |
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| ID | 7975607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 18683 |
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| End bp | 19630 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795914 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_002947188 |
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| Protein GI | 239820003 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.940655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCAAA GAAGAAGAGC CACCGCCGCG CTGGCCGCGG CCCTTGTCGG CCTGCCGGCC
TTCGCCCAGG CGCAGCAGGA GATCTACATT CCGCTCGTGT CCAAGGGCTT CCAGCACCAG
TTCTGGCAGG CCGTGAAGTC CGGCGCCGAG CAGGCCGCCA AGGACCTGAA GGTGAAGGTC
ACCTTCGAAG GCCCCGAGAC CGAGGCGATG GTCGACAAGC AGATCGACAT GCTCGCCGCC
GCGCTCGCCA AGAAGCCGCA GGCCATCGGC TTTGCGGCGC TCGACAGCCA GGCCGCCATT
CCGCTGCTGA AGAAGGCGCA GGCCGCCAAG ATTCCGGTGG TGGCGTTCGA CTCGGGCGTG
GACAGCGACA TTCCCGTGAC CACCACCACC ACCGACAACA AGGCCGCCGC CGCGCTGGCG
GCCGACAAGA TGGCCGAGAT GATCGGCAAG TCGGGCGAAG TGGCGCTGGT GGTGCACGAC
CAGACCAGCC GCACCGGCGT GGACCGGCGC GACGGCTTCG TCAACCGCAT CAAGTCGGCC
TACCCGAACA TCAAGATCGT GAGCGTGCAG TACGGCGGCG GCGACCAGCT GAAGTCGACC
GAGATCACCA AGTCGATCCT GCAGGCCTCG CCCAACCTGA AGGGCATCTT CGGCGCCAAC
GAGGGCTCGG CCATCGGCGT GGTCAACGGC GTGAAGGAGA TGAAGCGCAG CGGCAAGGTC
GTGATCATCG GCTACGACTC CGGCAAGCAG CAGAAGAACG CGATCATGGA CGGCAGCATG
GCCGGCGCCA TCACGCAGAA CCCGGTGGGC ATGGGCTACA AGACGGTGGA AATGGCGGTG
AAGGCGATCA AGGGCGAGAA GCTGCCCAAG GTGGTCGATA CCGGCTTCTT CTGGTACGAC
AAGACCAACA TCGCTGACCC GAAGATCGCA TCGGTCCTGT ACGACTGA
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| Protein sequence | MIQRRRATAA LAAALVGLPA FAQAQQEIYI PLVSKGFQHQ FWQAVKSGAE QAAKDLKVKV
TFEGPETEAM VDKQIDMLAA ALAKKPQAIG FAALDSQAAI PLLKKAQAAK IPVVAFDSGV
DSDIPVTTTT TDNKAAAALA ADKMAEMIGK SGEVALVVHD QTSRTGVDRR DGFVNRIKSA
YPNIKIVSVQ YGGGDQLKST EITKSILQAS PNLKGIFGAN EGSAIGVVNG VKEMKRSGKV
VIIGYDSGKQ QKNAIMDGSM AGAITQNPVG MGYKTVEMAV KAIKGEKLPK VVDTGFFWYD
KTNIADPKIA SVLYD
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