| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5319 |
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| Symbol | |
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| ID | 7975606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 17625 |
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| End bp | 18653 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795913 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002947187 |
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| Protein GI | 239820002 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.300421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACAACCC CCACCGCCGC CACCACCGCC GCCGCAGCGG GCTTCTCGCT GAAGGCGCGG
CTCTTTCGTC CCGCCACGCG GCAGAAGCTC CTGGCCTTTG CCAGCCTGAT CGCGCTGCTG
GTGTTCTTCA GCTTTGCGTC GCCGCAGTTC CTGCAGACCG ACAACCTCGT GAGCATCCTG
CAGTCGACCG CGGTGAACGG CGTGCTGGCC ATTGCCTGCA CCTTCGTCAT CATCACCGCG
GGCATCGATC TTTCGGTGGG CACGCTGATG ACCTTCTGCG CGGTCATGGC CGGCGTGGTG
CTCACCTACA TGGGCATGCC GCTCGCACTG GGCATTGCGG CGGCGATCTT CTTCGGTGCG
CTGGCGGGGT TTGTCTCGGG CGTGCTGATC GCCAAGCTCA AGATCCCGCC CTTCATCGCC
ACGCTGGGCA TGATGATGCT GCTCAAGGGC CTGTCGCTCG TGATCTCGGG CACCAAGCCG
ATCTACTTCA ACGACACGCC GGACTTCCCG GCCATCTCGC AGGATTCGCT GATCGGCTAC
TTCATTCCGT CGCTGCCGAT TCCCAACGCG GTGCTGATCC TCTTCCTGGT GGCGGTGGCC
GCGAGCATCG TGCTCAACAA GACCATCCTC GGGCGCTACA CCTTCGCGCT CGGCAGCAAC
GAGGAGGCCG TGCGCCTGTC GGGCGTGAAC ACCGATTTCT GGAAGATCGT GGTCTACACG
GTGAGCGGCG GCATCTGCGG CATCGCGGGC CTCCTGATCG CCTCGCGCCT GAACTCCGCG
CAGCCGGCGC TGGGGCAGGG GTACGAACTC GATGCGATCG CGGCGGTGGT CATCGGCGGC
ACCTCGCTCA GCGGCGGCAC CGGCACCATC GTGGGCACGA TCATCGGCGC CTTCATCATG
AGCGTGCTGA CCAACGGCCT GCGCATTCTC TCGGTCGCGC AGGAATGGCA GACGGTGGTC
ACGGGCGTGA TCATCATCCT GGCCGTGTAC GCGGACATCC TGCGCCGCCG CAGCAGCAGC
GCGCACTGA
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| Protein sequence | MTTPTAATTA AAAGFSLKAR LFRPATRQKL LAFASLIALL VFFSFASPQF LQTDNLVSIL
QSTAVNGVLA IACTFVIITA GIDLSVGTLM TFCAVMAGVV LTYMGMPLAL GIAAAIFFGA
LAGFVSGVLI AKLKIPPFIA TLGMMMLLKG LSLVISGTKP IYFNDTPDFP AISQDSLIGY
FIPSLPIPNA VLILFLVAVA ASIVLNKTIL GRYTFALGSN EEAVRLSGVN TDFWKIVVYT
VSGGICGIAG LLIASRLNSA QPALGQGYEL DAIAAVVIGG TSLSGGTGTI VGTIIGAFIM
SVLTNGLRIL SVAQEWQTVV TGVIIILAVY ADILRRRSSS AH
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