Gene Vapar_5316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5316 
Symbol 
ID7975603 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp14305 
End bp15024 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content70% 
IMG OID644795910 
ProductGntR domain protein 
Protein accessionYP_002947184 
Protein GI239819999 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.173644 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTCCCC CCGCCACCAC CAAACCCGCC GACACCCGCC GGCTCTACCA GCAGGTTGCA 
GACCAGATCC GGGCTGTCAT CCGCGACGGC AACCTGCCCG TCGGCGCGCG CCTGCCACCG 
GAGCGGGAGT TGGCCTTGCA GCTGGGTGTG TCGCGGCCTT CGCTGCGCGA AGCGCTGATT 
GCCCTGGAGA TCGACGGGCG CATCGAGATA CGGATGGGGT CGGGCGTGTA TGTCTGCGCG 
TCGCCCGACA CGCCGGAGCG CGCCACGCCG GCGGTGGGCG AGAGCCCGTC CGAAATGATC 
CAGGCGCGCG CGATGCTCGA AGGCTCGGTC GTCACGCTGG CCTCGGCCCG CGTGAACCCG 
CAGCACCTGG AGCGCGTGAA GGCCTCGCTG GAAAGCATGC GCGAGGACGG CCTGAACGGC 
CGCGCGCAGA TCGAGAACGA CCGGCGCTTC CACATCGCCA TCGCCGAGAT GACCGGCAAC 
TCGGTGCTTG TGCGGCTGGT GGGGGAACTC TTCGACGGCC GGCACAGCCC GATCTCCTCG 
CGCATGAGCG AGCGCGCAGA GAATTCGCAT GCGTGGAAGG CGGCCTTCGC CGAGCACGAG 
GCGATCTACC GCGCGCTCGA AGCGCGGGAC CCGCAGGCCG CGGTGGCAGC CATGCTGCAT 
CACCTGAGCG CCTCGCATGC GCGGTGGACG GAGGAATCGG CGCTGCCTAC GGCCGGCTGA
 
Protein sequence
MLPPATTKPA DTRRLYQQVA DQIRAVIRDG NLPVGARLPP ERELALQLGV SRPSLREALI 
ALEIDGRIEI RMGSGVYVCA SPDTPERATP AVGESPSEMI QARAMLEGSV VTLASARVNP 
QHLERVKASL ESMREDGLNG RAQIENDRRF HIAIAEMTGN SVLVRLVGEL FDGRHSPISS 
RMSERAENSH AWKAAFAEHE AIYRALEARD PQAAVAAMLH HLSASHARWT EESALPTAG