Gene Vapar_5312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5312 
Symbol 
ID7975599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp8621 
End bp9997 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content66% 
IMG OID644795906 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_002947180 
Protein GI239819995 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00895] benzoate transport 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.104662 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCAAA TCGATCTTCA CAAGCTGGCC GACGATGCCC GCTTCAACCG CTTCCACGGC 
CTCGTGCTGT TCTGGTGCGC GCTGATCATC GTGTTCGACG GCTACGACCT GTCGGTCGTG
GGCATCGCGC TGCCCTCGAT CATGAAGAAG ATGGGCGTCG ACGCCACCAA CGCGGGCTTC
ATGGTCAGCT CCGCGCTTTT TGGAATGATG TTCGGCGCCA TCTTCATGGG GACCATTGCC
GACCGGATCG GACGCCGCTG GGCGATCGCC ATCTGCGTGG GCCTCTTCAG CGTGTTCACG
GCCTGCGCCG GGCTGGCGGA GGACGCCATT GCGTTCAGCG CCATGCGCTT TCTTGCCGGG
CTCGGCATCG GCGGCGTGAT GCCGAACGTC GTCGCGCAGA TGACCGAGTA CTCGCCGAAG
AAGATCCGTG CGACCCTTGT CACGCTGATG TTCAGCGGCT ATGCGGTCGG GGGGATGATC
GCGGCGATCC TCGGCAAGGG GCTCATCGAA AGCTACGGCT GGCAATCGGT GTTCTTCGCG
GCCGGCCTGC CGGTCTTGCT GATTCCCTTC ATCCTCAAAT CGGTTCCGGA ATCGATGCCC
TTCCTGCTGG CCCAGGGCCG TACCGAAGAG CTGAAGAAGA TCGCCTCACG GCTCGACCCC
AGCTACACGC CGCAGGCGAC CGACCGCTTC GCGGTGCCCG CCAAGGACCG GGCCGACAGC
GCACCGATCA AGCACCTCTT CTTCGATGGC CGCGGCTTCA GCACCGTGAT GTTCTGGATC
GCATTCTTCA TGTGCCTGTT CATGGTCTTC GCGCTGAGCT CATGGCTCAC CAAGCTCATG
GCAAGCGCGG GCTACAGCCT GGGCTCGGCC CTGACCTTCG TGCTGGTGCT GAACGCGGGT
GCGATGGTCG GCGCCATCGC GGGCGGCTGG CTCGCCGACC GGTTCCACAT CAAGTACGTG
CTCGCCGGGA TGTATGCGCT GGCCGCGGTG TCGCTCACGC TGCTGGGCTA CAAGATGCCG
ACACCGGTGC TGTTCATCCT GATCGGGCTG GCCGGCGCAT CGACGATCGG CACGCAGATC
GTGGCCAACG CCTACACCGG CCAGTACTAC CCGATGGCCG TGCGCGCCAC CGGCCTGGGC
TGGGCATTGG GCGTGGGCCG CAGCGGCGCG ATCCTGGCGC CGATCGTCAT CGGCATGCTG
GTCGGCATGA ACCTGCCGCT GCACCAGAAC TTCATTGCCA TCGCGATTCC GGCCGTCATC
GGCATGGTCG CGGTGCTGCT CATCCAGCAC GACCGCTCGG CCTCGGTGCT GAAGGCGGAG
GCCGCGCCCG CGCTGGGCAA GGTGGCGGCG GGCGTCTCCG GAACGGCCGG GAGCTGA
 
Protein sequence
MRQIDLHKLA DDARFNRFHG LVLFWCALII VFDGYDLSVV GIALPSIMKK MGVDATNAGF 
MVSSALFGMM FGAIFMGTIA DRIGRRWAIA ICVGLFSVFT ACAGLAEDAI AFSAMRFLAG
LGIGGVMPNV VAQMTEYSPK KIRATLVTLM FSGYAVGGMI AAILGKGLIE SYGWQSVFFA
AGLPVLLIPF ILKSVPESMP FLLAQGRTEE LKKIASRLDP SYTPQATDRF AVPAKDRADS
APIKHLFFDG RGFSTVMFWI AFFMCLFMVF ALSSWLTKLM ASAGYSLGSA LTFVLVLNAG
AMVGAIAGGW LADRFHIKYV LAGMYALAAV SLTLLGYKMP TPVLFILIGL AGASTIGTQI
VANAYTGQYY PMAVRATGLG WALGVGRSGA ILAPIVIGML VGMNLPLHQN FIAIAIPAVI
GMVAVLLIQH DRSASVLKAE AAPALGKVAA GVSGTAGS