| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5310 |
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| Symbol | |
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| ID | 7975597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 6474 |
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| End bp | 7343 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795904 |
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| Product | Hydroxyquinol 1,2-dioxygenase |
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| Protein accession | YP_002947178 |
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| Protein GI | 239819993 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.123777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGACA TCGACGAATG GACCATCACC AGCGCGGCCC TGAAGGCGCA GGCCGCCACG
CCCAGCCCGC GCCTGAAGGC CGTGATGGAC AGCCTGGTGC GGCATCTGCA CGACTTTGCG
CGCGAGGTGC AGCTCACCGA GGCCGAGTGG GCCTGCGGCA TCGACTTTCT CACGCGGGTC
GGAAAGATCA CGGACGACAA GCGCCAGGAG TTCATCCTGC TGTCCGACGT GCTGGGGCTT
TCGACGCTGG TCACCGCGCA GTGCAACCGG CGCCCCACGG GATGCACCGA GGCGACGGTG
TTCGGCCCCT TCTACGTGCC CGATGCGCCG GAGTACGAGA ACGGCGACGA CATCTCCAAC
GGCGCAAGCG GCGAGCCCTG CTTCGTCGCC GGCACCATCC GGGGCATCGG CGGCGAGCCG
ATCGGCGATG CGAGCATCGA CGTGTGGCAA TCCGATGATG AAGGCTGGTA CGACGTGCAG
CGCCCCGGGC TGGACCATGC GCAGGGTCGT GGCCAGCTGA AGAGCCTGGA AGACGGGCGC
TACCACTTCA GGTCCATCGT GGCCGTGCCC TATGCCATTC CCCACGACGG CCCGGTGGGC
CAGATGCTGG AGCAGCTCGG CCGCCACCCG TGGCGTCCCG CGCACCTGCA CTTCATGATC
AAGGCGCCGG GCTACGAGAC GCTCATCACC CATGTGTTCC GCTCGGGCGG CAACTACCTG
GGCTCGGACG CCGTCTTCGG CGTGCGCTCT TCCCTCATCG CCGACTGGAA GCGCCACGAG
CTCGGCATCG CGCCCGACGG AACGCACATG AAGGTGCCGT TCCACACGCT CGACTACGAC
TTCGTGTTGA ACAACGCATT GAGGGACTAA
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| Protein sequence | MIDIDEWTIT SAALKAQAAT PSPRLKAVMD SLVRHLHDFA REVQLTEAEW ACGIDFLTRV
GKITDDKRQE FILLSDVLGL STLVTAQCNR RPTGCTEATV FGPFYVPDAP EYENGDDISN
GASGEPCFVA GTIRGIGGEP IGDASIDVWQ SDDEGWYDVQ RPGLDHAQGR GQLKSLEDGR
YHFRSIVAVP YAIPHDGPVG QMLEQLGRHP WRPAHLHFMI KAPGYETLIT HVFRSGGNYL
GSDAVFGVRS SLIADWKRHE LGIAPDGTHM KVPFHTLDYD FVLNNALRD
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