| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5307 |
|---|
| Symbol | |
|---|
| ID | 7975594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 3892 |
|---|
| End bp | 4428 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795901 |
|---|
| Product | transcriptional regulator, MarR family |
|---|
| Protein accession | YP_002947175 |
|---|
| Protein GI | 239819990 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCA GAAAACAGAC CGCAGCAAAG TCGACGCAGC TACGCAAGGC GCGCACCGAG
GCACCTCCCA AATTGAATGC AACTGCAGAC AAATCGGCAG ACCACGACCT CGAGCGGGCC
ATTCCGTACC TGCTTGCCCG CGCGGGCATG CGCATGGGGC AGTCGTTCAG CAAGGAGCTC
AAGCAGTTCA AGCTCTCGCT GACCGAGTGG CGGGTGTGCG TGGCGCTGCA CCACAAGGCG
CATCAGCGGC TCTCCGACCT GGCGCTGCAC ACGTCGACGG ACGCTTCCAC GCTCTCGCGG
GTGGTCGACG GCCTGCTGCA GCGCGGCGTG CTGGTGCGCG ACCGGTCGGA CGAGGATGCG
CGCGCGCTCG CGCTGAACCT GACCGAGGCG GGCCGCGACC TCACGCTGCG GATCATTCCG
CTGGCCCAGG TGTACGAGCG CGTCTCGCTG GCCGGCCTGA CCACGGCGCA GGCCGAATCG
CTCCGGGACA TGCTCCGGAT GGTCTACGAC AACCTGGCAG TGCTGGACAA CGAATGA
|
|---|
| Protein sequence | MATRKQTAAK STQLRKARTE APPKLNATAD KSADHDLERA IPYLLARAGM RMGQSFSKEL
KQFKLSLTEW RVCVALHHKA HQRLSDLALH TSTDASTLSR VVDGLLQRGV LVRDRSDEDA
RALALNLTEA GRDLTLRIIP LAQVYERVSL AGLTTAQAES LRDMLRMVYD NLAVLDNE
|
|---|
| |