| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5298 |
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| Symbol | trmE |
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| ID | 7972731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5621984 |
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| End bp | 5623399 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795892 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002947166 |
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| Protein GI | 239818256 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.414752 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGCCC GCACCACCGA TCCCATCGTC GCCATCGCCA CCGCCTCGGG GCGCGGGGCG
GTCGGCATCG TGCGGGTGTC TGGCGCCCGG CTCGCGCCGC TGGTCGACGC GCTCTGCGGC
CGGCCGCTCA AGCCGCGCGA AGCCACCTAC CTTCCCTTTC GCGATGCGGC CGGCGAGCCG
GTCGACCACG GCCTGGCCAT CCACTTTCCC TCGCCCCATT CGTTCACGGG CGAAGACGTG
CTCGAACTGC AGGCCCATGG CGGAACGGTC GTGCTGCAGC TGCTGCTGGC GCGCTGCCTC
GAAGCCGCCG CCGAGGCCGA TCCGGTCACC GGCCGGCCGC GCCTGCCTGG CCTGCGCGTG
GCCGAGCCGG GCGAGTTCAG CCAGCGCGCC TTTCTCAACG GCAAGATCGA CCTCGCCCAG
GCCGAAGCCA TTGCCGACCT GATCGACGCC AGCACCGAGG CGGCCGCGCG CAGCGCCGGG
CGTTCGCTGT CGGGTGCCTT TTCGCGCGAG ATCCACGCGC TGCGCGATGC GCTGATCCAC
CTGCGCATGC TGGTGGAGGC GACGCTCGAC TTTCCGGAAG AGGAAATCGA CTTTCTCCAG
AAGGCCGATG CGACGGGGCA GCTGGCGAAG CTGCAGGCGC AGCTGGCGGC AGTTCAGCAG
CGCGCCAAAC AAGGTGCGCT GCTGCGCGAA GGCATCAAGG TGGTCATTGC GGGCCAGCCC
AATGCGGGCA AGAGTTCGCT GCTCAATGCG CTGGCCGGCG CCGAGCTGGC CATCGTGAGC
GCGGTGGCGG GCACGACGCG CGACGTGGTG TCCGAGACCA TCCAGATCCA CGGCGTGCCG
CTGCACGTGG TGGACACGGC CGGCCTGCGC GAAAGCAGCG ACGAGGTCGA ACAGATCGGC
GTGGCCCGCG CCTGGGGCCA GATCGAGGGC GCCGATGCCG TGCTGTTCCT GCACGACCTG
ACACGCACCG GCCAGCCCGA GTACGCCGCC GCCGACGCCG AGATCCTGCG CGTGCTGCAA
CACAAGCTGC CCGCGAGCGT GCCGGTGCTC GATGTCTGGA ACAAGCAGGA CGCCGCGCCA
ATGCCGGAGA CGGCGGGTGC GGCCCAAGGC ATCGCCCTGT CCGCCAAGAC CGGCCTCGGC
ATCGAGGCGC TGCGCGAACA GCTGCTGGCC ATGGCCGGCT GGCAGGCCGT GCCCGAGGGC
GTCTACCTGG CGCGGGCGCG CCATGTGCAG GCGCTGGGCC AGGTGGAAAC GCACCTGGCG
CTGGCCGCGA GCCATCTGGC GGCGCAGGCG CAGCTGCTCG ACCTGCTGGC CGAGGAGCTT
CGCCTTGCGC AGAACGCACT GAACGAAATC ACCGGCGAAT TCGGCGCCGA CGACCTGCTG
GGCGTCATCT TTTCTCGCTT CTGTATCGGC AAATAG
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| Protein sequence | MLARTTDPIV AIATASGRGA VGIVRVSGAR LAPLVDALCG RPLKPREATY LPFRDAAGEP
VDHGLAIHFP SPHSFTGEDV LELQAHGGTV VLQLLLARCL EAAAEADPVT GRPRLPGLRV
AEPGEFSQRA FLNGKIDLAQ AEAIADLIDA STEAAARSAG RSLSGAFSRE IHALRDALIH
LRMLVEATLD FPEEEIDFLQ KADATGQLAK LQAQLAAVQQ RAKQGALLRE GIKVVIAGQP
NAGKSSLLNA LAGAELAIVS AVAGTTRDVV SETIQIHGVP LHVVDTAGLR ESSDEVEQIG
VARAWGQIEG ADAVLFLHDL TRTGQPEYAA ADAEILRVLQ HKLPASVPVL DVWNKQDAAP
MPETAGAAQG IALSAKTGLG IEALREQLLA MAGWQAVPEG VYLARARHVQ ALGQVETHLA
LAASHLAAQA QLLDLLAEEL RLAQNALNEI TGEFGADDLL GVIFSRFCIG K
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