| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5295 |
|---|
| Symbol | |
|---|
| ID | 7972728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5618357 |
|---|
| End bp | 5620342 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795889 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_002947163 |
|---|
| Protein GI | 239818253 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCGT TCGATCTCAC GCTGATGTAT TTGCTGGCCG CAGTGCTCGG CGTGGTGGTC
TGCCGCTCGC TGAAACTGCC GCCGATGCTG GGCTATCTGT CGGCCGGCGT GCTGATCGGG
CCGCATGCGC TGGCATTGGC GCAGAACTCC GAAGCCATCC GCCATCTCGG CGAATTCGGC
GTGGTGTTCC TGATGTTCGT GATCGGGCTC GAATTCAGCC TGCCCAAGCT GCGCGCCATG
CGCAAGCACG TGTTCGGCCT GGGCCTGCTG CAGGTGCTGC TGACCATGGC CATTGCCACC
GCCGGGGCAC TCGCCATCGC CTCGCAGCTC CCTCCGGCCT GGCGGCTCGG GTGGCAGACG
GCGCTGGCGC TGTCGGGCGC CCTCACGATG AGCAGCACCG CGATCGTGGT CAAGCTGATG
GCCGAGCGGC TCGAGCTCGA GAGCGAACAC GGCAAGCGCG TGATGGGCGT GCTGCTGTTC
CAGGACCTGG CGGTGGTGCC GCTGCTGGTG CTGATTCCCG CGCTGGGCGC GCCGCCCGAG
GCGCTGGCCA AGGCGATCGG CCTGGCGCTC GTGAAGGCCA CGCTGCTGAT CGGCGTGCTG
CTCTATGGCG GCCCGCGCAT CATGCGCTGG TGGCTCACGC TCGTTGCGCG GCGGCGCAGC
GAGGAGCTCT TCATCCTGAA CGTGCTGCTG GTCACGCTCG GCCTGGCCTG GCTCACCGAA
CTGGCCGGCC TGAGCCTGGC GCTGGGCGCC TTCATCGCCG GCATGCTGGT GTCGGAGACC
GAATACAAGC ACCAGGTCGA AACCGACATC CGTCCGTTCC ACGACGTGCT GCTGGGCCTG
TTCTTCATCA CGGTGGGCAT GTCGCTCGAC TGGCACATCG TGGTGCAGCG CTGGGCGCTG
GTGGCCGTGC TGCTGCTGCT GCCGCTGGCG TTCAAGCTGG CGCTGGTGAC GCTGCTGGCG
CGGGTGCTGG GCGCCACCGC GGGCGTGTCG CTGCGCACCG GCCTCTACCT GGCGCAGGCC
GGCGAATTCG GCTTTGTGCT GCTGGCGCTG GCGCAGGAGC GCAGCCTGCT GCCGCCGTGG
CTGGCCAACC CGGTGCTGGC GTCGATGGTG CTGTCGATGC TCGCCACGCC CTTCATCGTG
ATGTACACCA ACGCCATCGT GCGCAAGCTG GTGGCGAGCG ACTGGCTCCA GCAATCGCTG
CAGATGACCA CGATCGCGCG CAAGACCATC AATACCGCCA AGCACGTGAT CATCTGCGGC
TACGGGCGCT GCGGCCAGAA CCTGGCGCGC ATCCTGGAGC GCGAAGGCAT TCCCTACATG
GCGCTGGACC TCGACCCCGA CCGTGTGCGC CAGGCCGCAG CGGCGGGCGA TTCGGTGGTG
TTCGGCGACG CGGCCCGGCT GCAGGCGCTG ATGGCGGCCG GCCTGGCGCG CGCCAGCGCC
GTGGTCGTGA CCTATCTCGA TGTGCCGGGT GCCATGAAGG TGCTGGCCAA CATCCGCTCC
CACGCGCCGC AGGTGCCGGT GATCGTGCGC ACGCAGGACG ACCTCGACCT CGAGAAGCTG
CAGGCCGCCG GCGCGACCGA GGTGGTGCCC GAGGCCATCG AGGGCTCGCT GATGCTCGCG
AGCCATGCGC TGGCGCTGGT CGGCGTGCCG ATGCGGCGCG TGATCCGCGT GGTGCAGGAC
CAGCGCGATG CGCGCTACAA CCTGCTGCGC GGCTACTTCC ACGGCGCGGA CGACGACAAC
GCCGACGAGC TCGACCACGA GCGGCTCAAC ACCTTCACGC TCACGCCCGG CGCCCGCGCC
GTCGGCCAGA CCCTGGCGCG GCTGGCACTC GACAGCCTGG GCGTGCGCGT CGCCAGCCTG
CGCCGCCACG ACGGCCAGAA CCAGGTGTTC ACCGACGACA CGGTGCTGAT CGACGGCGAC
ACGCTCGTGC TGTGCGGCAA GCCTGCCGCC CTGGCCGTGG CCATCGAGCG GCTGCAAAAG
GGCTGA
|
|---|
| Protein sequence | MSSFDLTLMY LLAAVLGVVV CRSLKLPPML GYLSAGVLIG PHALALAQNS EAIRHLGEFG
VVFLMFVIGL EFSLPKLRAM RKHVFGLGLL QVLLTMAIAT AGALAIASQL PPAWRLGWQT
ALALSGALTM SSTAIVVKLM AERLELESEH GKRVMGVLLF QDLAVVPLLV LIPALGAPPE
ALAKAIGLAL VKATLLIGVL LYGGPRIMRW WLTLVARRRS EELFILNVLL VTLGLAWLTE
LAGLSLALGA FIAGMLVSET EYKHQVETDI RPFHDVLLGL FFITVGMSLD WHIVVQRWAL
VAVLLLLPLA FKLALVTLLA RVLGATAGVS LRTGLYLAQA GEFGFVLLAL AQERSLLPPW
LANPVLASMV LSMLATPFIV MYTNAIVRKL VASDWLQQSL QMTTIARKTI NTAKHVIICG
YGRCGQNLAR ILEREGIPYM ALDLDPDRVR QAAAAGDSVV FGDAARLQAL MAAGLARASA
VVVTYLDVPG AMKVLANIRS HAPQVPVIVR TQDDLDLEKL QAAGATEVVP EAIEGSLMLA
SHALALVGVP MRRVIRVVQD QRDARYNLLR GYFHGADDDN ADELDHERLN TFTLTPGARA
VGQTLARLAL DSLGVRVASL RRHDGQNQVF TDDTVLIDGD TLVLCGKPAA LAVAIERLQK
G
|
|---|
| |