| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5280 |
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| Symbol | |
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| ID | 7972713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5605153 |
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| End bp | 5606331 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795874 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002947148 |
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| Protein GI | 239818238 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGCA ACCTCTGGCT GCTCGCCATC TGCCAGGGCC TGTTCCTGAC CAACAACGTC
ACCTTCATCG CCATCAACGG GCTGGTGGGC CTGAGCATCG CGCCGCGCGG CTGGATGGCC
ACGCTGCCGG TCATGGGCTA CGTGGTGGGC GGTGCGCTCA CCACCGGGCT GGTGGCGCGC
ACGCAGCAGC GCTTCGGGCG GCGCGGGTCG TTCCAGATCG GGCTGGCGGT GGGGCTGGGC
TCGGCCTTGC TGTGCGCATT CGCGGCCATC TCGAAGAACT TCTGGCTCCT GTGCCTGGCC
ACGGTGGTGG CGGGCTACTA CAACGCCAAC GCGAACCTCT ATCGCTTCGC TGCCGCCGAA
CTCGCGGCCC CGGCCTGGCG CGAGAAGGCG GTGTCGCTGG TGATGGCCGG CGGCTTGATC
GGCGCGGTGG CGGGGCCCAA CCTGGCGGCC GCCACGCGCG AAGCGTTCGC GGTGCCGTTC
GCGGGCGCCT ACATCGCGCT GGCGGCGGTG GCGCTGCTGT CGATGGCAGT CATGCGCTTC
ATCGAGTTTC CCGCCACGCT CACGCGCCAG GAGGCGCTGG GCGGACGGCC GCTGTCGCAG
ATCGTGCGCC AGCCGGTGTT CATCGTGGCG GCCGCGGCAG GCGCGCTGGG CTTTGGCGTG
ATGAACCTGC TGATGGCCGC CACGCCCATT GCCATGCAGA TCTGCAGCCT GCCTTTTTCC
GATGCCGCGC TGGTGCTGGA ATGGCACGTG ATCGGCATGT TCGCGCCGGG CTTCTTCACC
GGCCACCTGA TCCGCCGCTT CGGCGCGCTG CCGGTGATGG GGGTGGGGCT TGCGCTCAAC
TTCGGCTGCA TCGCCGTTGC GCTGTCGGGC GTGGAGCTGC AGCACTTCCT CGTGGCGCTG
TGCCTCTTGG GCGTGGGATG GAATTTCCTG TTCACGGGCA GCACCACGCT CTCGCTCACG
GCCTACACCC CGCAAGAGCG CGACCGGGCG CAGGGCGCGC TCAATTTCTG CGTGTTCGCG
ACGCTCGCGC TGACTTCGTT CGCCTCGGGC GTGCTGGTCA CGACGCAGGG CTGGCAGCTG
CTGAACTACG GCTCGCTGGT GCCGGTGGTG CTCACGGGCG CGGCGCTGCT GTGGCTTGCG
CAGACGCGCC GGCGCGAGGC CGCAGCCGCG AGCGCCTGA
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| Protein sequence | MNRNLWLLAI CQGLFLTNNV TFIAINGLVG LSIAPRGWMA TLPVMGYVVG GALTTGLVAR
TQQRFGRRGS FQIGLAVGLG SALLCAFAAI SKNFWLLCLA TVVAGYYNAN ANLYRFAAAE
LAAPAWREKA VSLVMAGGLI GAVAGPNLAA ATREAFAVPF AGAYIALAAV ALLSMAVMRF
IEFPATLTRQ EALGGRPLSQ IVRQPVFIVA AAAGALGFGV MNLLMAATPI AMQICSLPFS
DAALVLEWHV IGMFAPGFFT GHLIRRFGAL PVMGVGLALN FGCIAVALSG VELQHFLVAL
CLLGVGWNFL FTGSTTLSLT AYTPQERDRA QGALNFCVFA TLALTSFASG VLVTTQGWQL
LNYGSLVPVV LTGAALLWLA QTRRREAAAA SA
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