Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5273 |
Symbol | ksgA |
ID | 7972706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5596090 |
End bp | 5596857 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644795867 |
Product | dimethyladenosine transferase |
Protein accession | YP_002947141 |
Protein GI | 239818231 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0030] Dimethyladenosine transferase (rRNA methylation) |
TIGRFAM ID | [TIGR00755] dimethyladenosine transferase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACACA TCGCCAGGAA GCGGTTCGGG CAGCACTTCC TGTCCGACGG CGGCATCATC GATGCCATCG TGCAGGAGAT CGCGCCGCAG CCCGGCGACG CCATGGTCGA GATCGGTCCG GGCCTGGCGG CGCTCACCCA GCCGCTGGTG GAGCGGCTCG GGCGCCTGAC GGTCATCGAG CTCGACCGCG ACCTGGCCAA GCGGCTGCGC GAGCATCCGC AGCTCGAGGT CATCGAGTCC GACGTGCTCA AGGTCGATTT CGCCGCGCTG GCCACCAGGT TCGCGGCGCC GCTGCGCGTG GTGGGCAACC TGCCCTACAA CATCTCCACG CCGATCCTGT TCCATCTGCT GGGCTTCGCG CACCTGATCG CCGACCAGCA CTTCATGCTG CAGAAGGAAG TGATCGACCG CATGGTCGCG CGGCCCGCCA CCTCCGACTA CAGCCGCCTG AGCGTGATGC TGCAGTGGCG CTACAGGATG GAAAACGTGC TGTTCGTGCC GCCCGAGAGC TTCGATCCGC CGCCGCGCGT CGACAGCGCC GTGGTGCGCA TGGTGCCGCT GGCCGAGCCG CCGGCCGTGG ATGCCGCCCG CCTGGGCGAA ATCGTGCAGG TGGCCTTCAG CCAGCGCCGC AAGATCATGC GGCACACGCT GGGCAAGTGG CTCGACGAGC ACGGCTTCGC AGGCCAGTTC GATGCCCAGC GCCGCGCCGA AGAGGTGCCC GTGGCCGAAT ACGTCGCCCT GGCCCAAGCC GTCCCCCCGC GCCCATGA
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Protein sequence | MAHIARKRFG QHFLSDGGII DAIVQEIAPQ PGDAMVEIGP GLAALTQPLV ERLGRLTVIE LDRDLAKRLR EHPQLEVIES DVLKVDFAAL ATRFAAPLRV VGNLPYNIST PILFHLLGFA HLIADQHFML QKEVIDRMVA RPATSDYSRL SVMLQWRYRM ENVLFVPPES FDPPPRVDSA VVRMVPLAEP PAVDAARLGE IVQVAFSQRR KIMRHTLGKW LDEHGFAGQF DAQRRAEEVP VAEYVALAQA VPPRP
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