Gene Vapar_5273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5273 
SymbolksgA 
ID7972706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5596090 
End bp5596857 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content69% 
IMG OID644795867 
Productdimethyladenosine transferase 
Protein accessionYP_002947141 
Protein GI239818231 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0030] Dimethyladenosine transferase (rRNA methylation) 
TIGRFAM ID[TIGR00755] dimethyladenosine transferase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACACA TCGCCAGGAA GCGGTTCGGG CAGCACTTCC TGTCCGACGG CGGCATCATC 
GATGCCATCG TGCAGGAGAT CGCGCCGCAG CCCGGCGACG CCATGGTCGA GATCGGTCCG
GGCCTGGCGG CGCTCACCCA GCCGCTGGTG GAGCGGCTCG GGCGCCTGAC GGTCATCGAG
CTCGACCGCG ACCTGGCCAA GCGGCTGCGC GAGCATCCGC AGCTCGAGGT CATCGAGTCC
GACGTGCTCA AGGTCGATTT CGCCGCGCTG GCCACCAGGT TCGCGGCGCC GCTGCGCGTG
GTGGGCAACC TGCCCTACAA CATCTCCACG CCGATCCTGT TCCATCTGCT GGGCTTCGCG
CACCTGATCG CCGACCAGCA CTTCATGCTG CAGAAGGAAG TGATCGACCG CATGGTCGCG
CGGCCCGCCA CCTCCGACTA CAGCCGCCTG AGCGTGATGC TGCAGTGGCG CTACAGGATG
GAAAACGTGC TGTTCGTGCC GCCCGAGAGC TTCGATCCGC CGCCGCGCGT CGACAGCGCC
GTGGTGCGCA TGGTGCCGCT GGCCGAGCCG CCGGCCGTGG ATGCCGCCCG CCTGGGCGAA
ATCGTGCAGG TGGCCTTCAG CCAGCGCCGC AAGATCATGC GGCACACGCT GGGCAAGTGG
CTCGACGAGC ACGGCTTCGC AGGCCAGTTC GATGCCCAGC GCCGCGCCGA AGAGGTGCCC
GTGGCCGAAT ACGTCGCCCT GGCCCAAGCC GTCCCCCCGC GCCCATGA
 
Protein sequence
MAHIARKRFG QHFLSDGGII DAIVQEIAPQ PGDAMVEIGP GLAALTQPLV ERLGRLTVIE 
LDRDLAKRLR EHPQLEVIES DVLKVDFAAL ATRFAAPLRV VGNLPYNIST PILFHLLGFA
HLIADQHFML QKEVIDRMVA RPATSDYSRL SVMLQWRYRM ENVLFVPPES FDPPPRVDSA
VVRMVPLAEP PAVDAARLGE IVQVAFSQRR KIMRHTLGKW LDEHGFAGQF DAQRRAEEVP
VAEYVALAQA VPPRP