| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5269 |
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| Symbol | |
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| ID | 7972702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5591107 |
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| End bp | 5592156 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795863 |
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| Product | band 7 protein |
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| Protein accession | YP_002947137 |
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| Protein GI | 239818227 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4260] Putative virion core protein (lumpy skin disease virus) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCTGA TGGATTTCAT CAAGAAACAG TTCATCGACA TCATCCAGTG GACCGAGACC
GGCGACGGCA CGCTGGCCTG GCGCTTCCCG ATGGCGGAGA TGGAAATCCA GAACGGCGCC
TCGCTCACCG TGCGCGAGTC GCAGGTGGCG GTGTTCGTCA ACGAAGGCCA GGTGGCCGAC
GTGTTCGGCC CGGGCATGTA CAAGCTCACG ACGCAGACGC TGCCCGTGCT CACGTACCTG
AAGAACTGGG ACAAGCTGTT CGAGTCCCCG TTCAAGAGCG ACGTCTACTT CTTCAGCACG
CGCCAGCAGG TCGACCAGAA GTGGGGCACG CCGCAGCCCA TCACCATCCG CGACAAGGAC
TTCGGCGCCG TGCGCCTGCG CGCCTTCGGC AACTACAGCT TCCGCATCGG CGATGCCAAG
CTGTTCCACA CCGAGATCTC GGGCACGCGC GACATCTACG GCGTGGCCGA CCTCGACGGC
CAGCTGCGCG GGCTGGTGCT GCAGAACATC AGCAACGCCA TCGCGTCCAG CGGCGTGCCG
TTCCTCGACC TTGCCGCCAA CCAGATCCAG TTCGCCCAGG CGCTGGCCGC CCAGCTGGTG
CCCGAGTTCG AGAAGATCGG CATCAAGCTC GAGAACATCA CGGTCCAGAA CGTCTCGCTG
CCCGAAGAAC TGCAGAAGAT CCTCGACCAG AAGATCGGCA TGGGCATGGT CGGCAACGAC
ATGGGCAAGT TCATGCAGTA CCAGACCGCG CAGGCCATTC CCAAGTTCGC CGAAGGCGCG
GGCGGCGGCA GCGGCATCGC GGGCGATGCC ATGGGCCTGG GCGCCGGCGT GGCGCTCGGC
CAGGTGCTGG CGCAGAACCT CGCGCAGGGG CTGAGCCCGG GCGCGGCGGC ACAGGCGGCC
GCAACCCAGC AGCAGCCGGC CGTGGCCGTG GTGAGCCCGG CCGACGTGAT GACCACGCTC
GAGAAGCTCG GCGAGCTCAA GACCAAGGGC ATCCTCACGC AGGAAGAGTT CGACGCCAAG
AAGGCGGAAC TGCTCAAGAA GCTGGTCTAA
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| Protein sequence | MALMDFIKKQ FIDIIQWTET GDGTLAWRFP MAEMEIQNGA SLTVRESQVA VFVNEGQVAD
VFGPGMYKLT TQTLPVLTYL KNWDKLFESP FKSDVYFFST RQQVDQKWGT PQPITIRDKD
FGAVRLRAFG NYSFRIGDAK LFHTEISGTR DIYGVADLDG QLRGLVLQNI SNAIASSGVP
FLDLAANQIQ FAQALAAQLV PEFEKIGIKL ENITVQNVSL PEELQKILDQ KIGMGMVGND
MGKFMQYQTA QAIPKFAEGA GGGSGIAGDA MGLGAGVALG QVLAQNLAQG LSPGAAAQAA
ATQQQPAVAV VSPADVMTTL EKLGELKTKG ILTQEEFDAK KAELLKKLV
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