| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5266 |
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| Symbol | |
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| ID | 7972699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5587776 |
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| End bp | 5589320 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795860 |
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| Product | spermidine synthase |
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| Protein accession | YP_002947134 |
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| Protein GI | 239818224 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCGCGC ATTCCGCCGA TGCGCGCGGG CCGCAGCCGG TCGAGATCGC GCTGCTGGCC
AGCGTGTTCG TGGTCGCGGC CTGCGGGCTG GTCTACGAGC TGACCGCGGC CGCGCTGAGC
TCCTACCTGC TCGGCGATTC GGTGCTGCAG TTCAGCACCA TCATCGGCAC CTACCTGTTC
GCGATGGGCG TGGGCTCGTG GCTCTCGCGC TTCTTCGAGC GCCAGCTGCC GGCGCACTTC
CTGCGCATCG AGCTGCTCGT GGCGCTGGTC GGCGGCGCGC TGCCGGCCGT TCTCTTCCTT
GCGAACGCCT ACGTGCCGGG CGCGTTCCGC CTGCTGCTCT ACGGGCTCGT GGTGGTGGTC
GGCACGCTCG TGGGGCTCGA GATCCCGCTG GTGATGCGCA TCCTCAAGCG CAACATCCAG
CTCAAGAACC TGGTGTCGCA GGTGCTCACC TTCGACTACC TCGGCGCGCT GGCGGTGTCG
GTGGCCTTTC CGCTCATCCT GGTGCCGCAG CTGGGCATGA TCCGCACCGG CCTCTTGTTC
GGCATCATGA ATGCCGCCGT GGCCGTGTGG GCGCTGTGGC TGTTCCGCCA TGAGCTGCGC
CGCATCGGCG CGCATGCGCT GGCCTGCCTG CTGGCGCTGG CCGCGCTGGT CGGCGCATTT
GCCGGGGCCG GCCACATCAC CACGCTGGCC GAGGACAAGT TCTACCAGGA CCGCATCGTG
TTCAGCGCCA CCTCGCCCTA CCAGCGCATC GTGGTCACGC GCGGGCAGCT CGGACACCGG
CTGTTCCTGA ACGGCAACCT GCAGTTCGCC GAGCGCGACG AGTACCGCTA CCACGAGGCG
CTCGTCCATC CGGTGATGGC TGCGCAGGGC GCACCGAAGA AGGTCGCGGT GCTCGGCGGC
GGCGACGGCA TGGCGGTGCG CGAGATCCTG AAATATCCCT CGGTCGAATC GGTCACGCTG
GTGGAGCTCG ATCCGAACAT GACCCAGCTC TTCACCGCGC ATGAAACGCT GGCGGCGCTC
AACGGCCATT CGCTCTCGTC GCCGAAGGTG AAGATCGTCA ATACCGATGC GTTCCAGTGG
CTGCAGCAGC CTGGGGATAT TTTTGATGTG ATCGTGGTGG ACTTTCCCGA CCCCACCAAC
TTCGCGATCG GCAAGCTCTA CACCAACAGC TTCTATGCGC TGCTCGAGAA GCGCCTCTCG
GCGAGCGGCT ACGCGGTGGT CCAGACCACT TCGCCGCTGG TCGCGCGCAA GAGCTACTGG
ACCGTGGCGG CGACCATCGA GTCGGTCGGC CTGCAGGCGA CGCCCTACCA CGCGCATGTG
CCGAGCTTCG GCGAATGGGG CTACATCATC GCGAGCCGGC GGCCGTACCG CATGCCCGAT
GCGCTGCCTT CGGGCCTGCG TTTTCTCTCG CCTTCCACCT TGCCGCTGAT GTTCGACTTT
CCGCTCGACA TGGCGCGCGT GCCGGCCGAA GTGAACCGGC TGTCGAACCA GACCCTTGTC
ACCACCTATG AGCAGGAGTG GGGCAAGGTG ATCACGACGC ACTAG
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| Protein sequence | MSAHSADARG PQPVEIALLA SVFVVAACGL VYELTAAALS SYLLGDSVLQ FSTIIGTYLF
AMGVGSWLSR FFERQLPAHF LRIELLVALV GGALPAVLFL ANAYVPGAFR LLLYGLVVVV
GTLVGLEIPL VMRILKRNIQ LKNLVSQVLT FDYLGALAVS VAFPLILVPQ LGMIRTGLLF
GIMNAAVAVW ALWLFRHELR RIGAHALACL LALAALVGAF AGAGHITTLA EDKFYQDRIV
FSATSPYQRI VVTRGQLGHR LFLNGNLQFA ERDEYRYHEA LVHPVMAAQG APKKVAVLGG
GDGMAVREIL KYPSVESVTL VELDPNMTQL FTAHETLAAL NGHSLSSPKV KIVNTDAFQW
LQQPGDIFDV IVVDFPDPTN FAIGKLYTNS FYALLEKRLS ASGYAVVQTT SPLVARKSYW
TVAATIESVG LQATPYHAHV PSFGEWGYII ASRRPYRMPD ALPSGLRFLS PSTLPLMFDF
PLDMARVPAE VNRLSNQTLV TTYEQEWGKV ITTH
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