| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5261 |
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| Symbol | |
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| ID | 7972694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5581357 |
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| End bp | 5582067 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795855 |
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| Product | Nucleotidyl transferase |
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| Protein accession | YP_002947129 |
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| Protein GI | 239818219 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCTGG CCGCCGGCCG CGGCGAGCGC ATGCGGCCGC TGACCGACAG CCTGCCCAAG
CCGCTGCTCG AAGTGCGCGG CAAGCCGCTG ATGCAGTGGC CGATGGAGGC GCTGGCCGCC
GGCGGCTTCA CCGAACTGGT GGTCAACACC GCCTGGCTCG GCGAGAAGAT CTCCAGCCGC
TTCGGCCTCA ATGCCTTGCT GGATGGGCAC CCTGCGCTAT CGATTTCATA CTCCGACGAA
GGCCATGACT TCGGCGAAGC GCTCGAGACG GCCGGCGGCA TCGTGCGCGC CCTGCCGCAA
CTGGGCGAGA TTTTCTGGGT GGCGGCCGGC GACGTGTTCG CGCCGGATTT CGTCTTCACG
CAGGCCTCGG TGGACCGCTT CGCGGCCAGC GGCAAGCTGG CGCACCTGTG GCTGGTGCCG
AACCCGGCGC ACAACCTCAA GGGCGACTTC GGCCTTTCCT CGGAAGGCCT GGCGCTCAAC
TCGGCGGCCG AGAAATACAC CTTCTCGACC ATCGGCCTGT ACAGGGCCGC GCTCTTCGCG
CCGCCTTACT GCGGCATTCC GGCCGGCAAC CCGGCGGGCG CCAAAGCCCC GCTGGCCCCG
ATCCTGCGCG CCGCGATGGA CAATGAACGC GTGAGCGCCG AGCTCTATGC CGGTCCCTGG
ACCGATGTGG GAACGCCCGA ACGGCTTCTT CAACTGAACA CGCCAAGATG A
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| Protein sequence | MILAAGRGER MRPLTDSLPK PLLEVRGKPL MQWPMEALAA GGFTELVVNT AWLGEKISSR
FGLNALLDGH PALSISYSDE GHDFGEALET AGGIVRALPQ LGEIFWVAAG DVFAPDFVFT
QASVDRFAAS GKLAHLWLVP NPAHNLKGDF GLSSEGLALN SAAEKYTFST IGLYRAALFA
PPYCGIPAGN PAGAKAPLAP ILRAAMDNER VSAELYAGPW TDVGTPERLL QLNTPR
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