| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5247 |
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| Symbol | |
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| ID | 7972680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5567798 |
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| End bp | 5569417 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795841 |
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| Product | CHAD domain containing protein |
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| Protein accession | YP_002947115 |
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| Protein GI | 239818205 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3025] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0011816 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGGCA TGGAAATCGA GTTCAAGTTT CATGTTCCCG CCGAGCGCCT GAAAGCCGTC
GAGGCCGCCA TGCGGCGCGG CAGCGTGGTG CGCACGCGGC TGCAGGCGCG CTACTTCGAC
ACCGCGGACC AGGCGCTGGC CGCCCAGGGC ATCGTGCTGC GCCTGCGCAA GGAAGGGCGG
CGCTGGGTGC AGACCGTCAA GGCCACCGGC GACAACGCGC TGCACCGGCT CGAACACAAC
GTCGATCTGG GCGCAGCGGC GGCCGGCGGC GTTGCGCCGG CCATCGACCC GCTGCGCCAC
CAGGGCACGC CCGTGGGCGA ACGGCTTGCC CAGGTGCTGG CCGCGAGCGG CGCACCGCTG
GTCGAGCGCC AGTCCACCGA CATCGTGCGG CTCACGCGCG ACGTGCGCAC CACTGGCGCC
GGCACGGCCG TGGTGGAGCT GGCGCTCGAC GTCGGCAAGG TCATCGCCCA TGCGGGCACG
CCGGACGAGC GCGAGTCGCC GGTGTGCGAG CTGGAACTCG AGCTCAAGCG CGGCGACGTG
CAAGGGCTGG TCGCGCTCGC GCGCCGCTGG TCGCAGCAGC ACGGCCTGTG GTTCAGCACC
GTGTCCAAGG CCGAGCGCGG TGCGCGCCTG CTGGCAAAAG TCGATGCGGT TCCGGCCGTG
AAGGCCGAGG CGCCGCGCTT TGCCGAAGAG AAGGAGAAGC CGGGCGGCCG CGCCATCCAG
CAGGCCGTGG TTGCGTCGTG CCTCGCGCAG ATGCTGCCCA ATGCCAGCGA GATCGCCGCG
GGCAGCACGG ATGAAGAGCA GATCCACCAG CTGCGCATCG GCATCCGGCG CCTGCGCACC
GCGCTGCGCG AACTCGCGGG GCTCGACCCG CGCACCGGTC TTTTCAACGG CGCCGAATGG
GAGCCGCCGC TGGTCGAGGC CTTCCGCGCG CTCGGCGCCC TGCGCGACCG CGAGCAGATC
CTGAAGCTGG CCCAGCCGCA ACTGCGCGAG GCGGGGGCGC CGGAGTTCGA TCCGCTGGCG
GGCGACGACG CGGCGGCCGA GGCGCCCTCG CCCGGCGAGG TGGTGCGCGC GCCGGCGTTC
CAGTCGGTGC TGGTGTCGCT GATCGGCTTT ACCGCGGCCA CCGCCGGGGA AGCTGCGCCG
CAGACCGAAG CCGAAGCTGC CGGCCAGCCC GCGTCAGCGC CGGCGCCGCT CGACGCCGCC
GAGGCGCGGC GCCTTCTACG CAAGCGCCTG CAGAAGCTGC ATCGGCAGGC GGTGCGCGAC
GGCCGCCGCT TCGAATCGCT GTCGGCCGAA GACCAGCACC GCACGCGCAA GCGGCTCAAG
CGCCTGCGCT ACCTGGCCGA ATTCGCGGCG CCGCTGTTCG CCGCCGATGC AGACGACGAC
AAGGAAAAGC CGGCCGCCGA GCGCTACCTG AAGCGCCTGC GCCCCGCGCA GGACGCGCTG
GGCGAATTCA ACGACGAAGC CGTGGCGCTC GCGCTCTACC GCGAAGCCAC CGCGCGCGAT
GCGCGCGCAT GGTTCGCCGT CGGCTGGTTC AGCGCGCGCC ATGCGGCGGG CGCGAAGGCC
TGCCGCAAGG CGCTGGGCCG GATCGCAAAG GCGCCGCGGT TCTGGAAGAA GGACAACTAG
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| Protein sequence | MAGMEIEFKF HVPAERLKAV EAAMRRGSVV RTRLQARYFD TADQALAAQG IVLRLRKEGR
RWVQTVKATG DNALHRLEHN VDLGAAAAGG VAPAIDPLRH QGTPVGERLA QVLAASGAPL
VERQSTDIVR LTRDVRTTGA GTAVVELALD VGKVIAHAGT PDERESPVCE LELELKRGDV
QGLVALARRW SQQHGLWFST VSKAERGARL LAKVDAVPAV KAEAPRFAEE KEKPGGRAIQ
QAVVASCLAQ MLPNASEIAA GSTDEEQIHQ LRIGIRRLRT ALRELAGLDP RTGLFNGAEW
EPPLVEAFRA LGALRDREQI LKLAQPQLRE AGAPEFDPLA GDDAAAEAPS PGEVVRAPAF
QSVLVSLIGF TAATAGEAAP QTEAEAAGQP ASAPAPLDAA EARRLLRKRL QKLHRQAVRD
GRRFESLSAE DQHRTRKRLK RLRYLAEFAA PLFAADADDD KEKPAAERYL KRLRPAQDAL
GEFNDEAVAL ALYREATARD ARAWFAVGWF SARHAAGAKA CRKALGRIAK APRFWKKDN
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