Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5242 |
Symbol | |
ID | 7969901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5563776 |
End bp | 5564456 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795836 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_002947110 |
Protein GI | 239818200 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTACG AATGGGACTT CAGCGGCGTC TGGGCGCACC GCGACATGCT GCTCGCGGGC TTCCTCGGCA CGATGAAGAT CGCCGCCGTC GCCATTGCGC TGGGCGTGGT GTTCGGCGTC GTGCTCGCGG CCCTGCGGCT CTCGGGCAGG GCGTGGCTCG CCAGGCCGGC GCTGTGGGTG ATCGAGTTCT ATCGCAACAC GCCGCCGCTG GTGCATTTCT TCTGGGCCTT CTATGCACTG CCGGTGCTCA TCGGCGTGAG CCTGGACCCG TACGCGGCGG CGGTCATTGC GCTGTCGACG CAGTCGGGCG CGTTCTTCGC CGAGGTGTTC CGCGGCGGCC TGGTGTCGAT CGAACGCGGG CAGTGGGAAG CGGCGCGCGC CGTCGGCATG CGCTCGCACC AGGCCTTGCG CCGCGTGGTG CTGCCGCAGG CGCTCGCGCG CATGCTGCCG CCGTTCATCG AGCGTTCGTT CGAACTCATC AAGACCACCG CGCTGGCCTC CACGCTGGCC TATTCCGACC TGCTCTACCA GGCCATGCAG CTCAACTCGA TCACCTTCCG GCCGCTGGAG GTGTACACGG TGGTCGCGGC CATCTTCTTC CTGGCGCTGT TCTCGCTGAG CCTCGTCGCA CGCGTGGCCG AGCACCGCCT GGCCATCTCC ACCCGCGCGG CAGGACACTG A
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Protein sequence | MNYEWDFSGV WAHRDMLLAG FLGTMKIAAV AIALGVVFGV VLAALRLSGR AWLARPALWV IEFYRNTPPL VHFFWAFYAL PVLIGVSLDP YAAAVIALST QSGAFFAEVF RGGLVSIERG QWEAARAVGM RSHQALRRVV LPQALARMLP PFIERSFELI KTTALASTLA YSDLLYQAMQ LNSITFRPLE VYTVVAAIFF LALFSLSLVA RVAEHRLAIS TRAAGH
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