| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5239 |
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| Symbol | |
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| ID | 7969898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5561444 |
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| End bp | 5562376 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795833 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947107 |
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| Protein GI | 239818197 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGACC TCAACGACAT CGCCATGTTC GTGCAGGTGG TGCGCCACGG CAGCTTTGCC
GGGGCGGCGC GCCGGCTGGG CCTGCCGCCC AACACCGTGA GCCGGCGCAT CCAGCAGCTC
GAGGCGCAGC TGGGCACGCG GCTCATGCAG CGCTCCACCC GCAGGCTCAC GCTGACCAGC
GCGGGCCAGG CGTTTCACGA GCGCTGCGCG GGCCCGGTCG ACGGGCTGGT CGAGGCCGGG
CAGGCGCTGA TCACCGGCAG CCAGCAGCCC AGCGGCCTGG TGCGCGTGGC GGCGACGGCC
GATTTCTTCG ATTTCTTCCC GATGGAGTGG GTGGCCGACT TCCTGGCCGC GCATCCGCTG
GTGCGCGTCG ACTTTGTTCT GAGCGACGCC AGGGCCGACC TGATTGCCGA GCAGATCGAC
ATCGCGTTCC GCGGCGGCGC GCTGCCCGAC TCCGGCTACG TCGGCCGCAA GCTCCTGGGC
GCACGGACCG ATGGCATGGT CGCGAGCCCC GCCTACATTG CCGCGCGCGG CGCGCCCGCC
ACCCTGCAGG ACCTGGCGAA CCACGATTGC GTCACCTCGC CCCATCCGAG CGGCCGCACC
CTGTGGCGCC TGGCCGGCCC CGGCGGCACG GAAGAAGAAG TGCAGGTTGC GGGCCGCTTC
AGCGGCAACA CCGCGCAGGC GCTGCGCAAG GCCGCGCTCG CCGGCCTGGG CATCGCGCTG
CTGCCGCCCA CCATGGCCCG GCTCGACCTG GAGGCCGGCC GGCTGGTGCC GGTGCTGCCG
CAGTACCAGC GCACGGGGCA GGGGCTGAGC GTGCTCTACC CGAGCCGCAA GCACCTGCCG
CTGGCGGTGT CGGCGTTCAT CGCGATGGTG ATGGAGAAGC TCAGCGCGGT GGAGGCGCTG
CCGGAGATGC TGCGCACCGA CCGGATTTCA TGA
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| Protein sequence | MLDLNDIAMF VQVVRHGSFA GAARRLGLPP NTVSRRIQQL EAQLGTRLMQ RSTRRLTLTS
AGQAFHERCA GPVDGLVEAG QALITGSQQP SGLVRVAATA DFFDFFPMEW VADFLAAHPL
VRVDFVLSDA RADLIAEQID IAFRGGALPD SGYVGRKLLG ARTDGMVASP AYIAARGAPA
TLQDLANHDC VTSPHPSGRT LWRLAGPGGT EEEVQVAGRF SGNTAQALRK AALAGLGIAL
LPPTMARLDL EAGRLVPVLP QYQRTGQGLS VLYPSRKHLP LAVSAFIAMV MEKLSAVEAL
PEMLRTDRIS
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