Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5235 |
Symbol | |
ID | 7969894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5557307 |
End bp | 5558875 |
Gene Length | 1569 bp |
Protein Length | 522 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795829 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_002947103 |
Protein GI | 239818193 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGTC GCAACCTCAT CCAGATGGGC GCCGCCTCGG CCGCCGGATT GACGCTGGCG GGTGTCCCGC TGCACCTGCT GGCGCAGGGC AAGAAGGGCG GCGTGATCAA CGCCGTGGTG CAGCCGGAGC CGCCGGGCCT GATGCTGGGC ATCACGCAGA ACGGCCCCAC GCAGATGATC GCGGGCAACA TCTACGAAGG CCTGCTGCGC TACGACGAGA AGATCAATCC GCTGCCCTCG CTGGCCACCT CGTGGACCGT CAACAAGGAA GGCACGCTCT ACACCTTCAA GCTCAAGCCC GGCGTCACGT GGCACGACGG CAAGCCCTTC ACCTCGGCCG ACGTGGTGTT CTCGGCCGAC GTGTTCCTGC GCAAGACGCA TGCGCGGCTG CGCGCCAACC TGGCCGCGGT GGAAAGCATC AAGGCCATCG ATCCGCTCAC GGTGGAGTTC AAGCTCAAGT ACCCCTTCGG CCCCTTCATC GGCATCTTCG AGGTCGGCAG CATGCCGATG ATCCCGAAGC ACATCTACGA AGGCACCGAG TTCGCGACCA ACCCGGCCAA TGCCACGCCC ATTGGCACCG GGCCGTTCAA GTTCAAGGAA TGGGTCAAGG GCTCTTACAT CCAGCTCGTG GCCAACGACA AGTACCACGT CAAGGACGTG CCGTTGGTCG AGAGCGTGTA CTTCCATGTC ATTCCCGACG CGGCCTCGCG CGCGGCGGCC TTCGAATCGG GCAAGGTCGA CCTGGTGCCG GGCGGCGCGG TCGAATACTT CGACGTGCTG CGGCTGTCCA AGCTGCCGGG CGCGGCGGTC ACCACCAAGG GCTGGGAGTT CTTTGCGCCG CATTCGTGGC TGTGGCTCAA CAACCGCAAG GCGCCGATGG ACAAGCTCAA GTTCCGCCAG GCCGTGATGT ACGCGATCGA CCGCGAAGCC ATGGCCAAGA TCGCCTGGCA GGGCTTCGCC AAGCCGGCGA CCGGGCCGTT CAACAGCAAC ATCAAGTTCC ACAGCACCGA CGTCGCCAAG TACCCGCGCA ACGTGGCCAC CGCCAAGAAA CTGCTCGAGG AAGCCGGCTA CAAGGGCGAG ACGCTGCGCC TGCTGCCGCT GCCCTACGGC GAAACGTGGG CGCGCTCGGC CGAGATCCTG CGCCAGAACC TCGCGCAGGC CGGCATCAAG GTCGAACTCG TGGCCACCGA CGTGGCGGGC TGGAACCAGA AGCTCAACGA GTGGGACTAC GACCTCGCCT TCACCTACGT CTACCAGTAC GGCGACCCGG CGCTGGGCGT GGCGCGCAAC TACACCACCG GCAACATCGC CAAGGGCTCG CCCTTCAACA ACGTCGAGGG CTATTCGAAC CCGAAGGTGG ACGAGCTGTT CGACGCCGGC GCCAAAGAGG CCGACCCCGA GAAGCGCAAG GCCATCTACC TGCAGGTGCA GAAGATCCTG CTCGACGAAG TGCCCGTGGC CTGGCTGCAC GAGCTCAACT TTCCGACGCT GTACCGCACC AAGCTGAACA ACATCATCAG CTCGGGCATC GGCCTGAACG ACAGCCTCGG TACCGCCACG CTCGCATGA
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Protein sequence | MKRRNLIQMG AASAAGLTLA GVPLHLLAQG KKGGVINAVV QPEPPGLMLG ITQNGPTQMI AGNIYEGLLR YDEKINPLPS LATSWTVNKE GTLYTFKLKP GVTWHDGKPF TSADVVFSAD VFLRKTHARL RANLAAVESI KAIDPLTVEF KLKYPFGPFI GIFEVGSMPM IPKHIYEGTE FATNPANATP IGTGPFKFKE WVKGSYIQLV ANDKYHVKDV PLVESVYFHV IPDAASRAAA FESGKVDLVP GGAVEYFDVL RLSKLPGAAV TTKGWEFFAP HSWLWLNNRK APMDKLKFRQ AVMYAIDREA MAKIAWQGFA KPATGPFNSN IKFHSTDVAK YPRNVATAKK LLEEAGYKGE TLRLLPLPYG ETWARSAEIL RQNLAQAGIK VELVATDVAG WNQKLNEWDY DLAFTYVYQY GDPALGVARN YTTGNIAKGS PFNNVEGYSN PKVDELFDAG AKEADPEKRK AIYLQVQKIL LDEVPVAWLH ELNFPTLYRT KLNNIISSGI GLNDSLGTAT LA
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