| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5234 |
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| Symbol | |
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| ID | 7969893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5556295 |
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| End bp | 5557266 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795828 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947102 |
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| Protein GI | 239818192 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTA CGCAGTTCAT GCTGGGCCGC GTGATGCAGG GCCTGCTGGC GATCCTGCTG
ATCGCCACGG TCAACTTCAT GCTGGTGCGC GCGGCGCCGG GCGATCCGGT GTCGGTGCTG
GCGGGCGAGG CGGGCGCGTC CGATCCGCAG TTCGTGGCGC AGCTGCGCGC GCAGTTCGGG
CTCGACCAGC CGATCACGAC GCAGCTCGCC ACCTATGTCG GCAAGGTGGT GCAGCTCGAC
CTGGGCTTTT CTTACAGGCA GCAGCAGCCG GTGCTGAAGC TCATCATGGA CCGGCTGCCG
GCCACGCTGC TGCTCACGGG TACGGCCTTT GCGCTGTCGC TGCTGTTCGG CATCACGCTG
GGTGCGCTGG CCGCGCGGCG CGCCGGCAGC TGGGTCGACA GCTCGATCAC GGTGGTGGCG
CTCATCTTCT ACGCCACGCC GCTCTACTGG CTCGCGCTGA TGGCGGTGCT GGTGTTCACG
GTGCAACTCG ACTGGCTGCC GGGCTTCGGC TTCAGCACCG TGGGCTCCGG CGCCACCGGC
CTGGCGCTGG CCTGGGACAT CGCGGGCCAC CTGGTGCTGC CGGCGCTGAC GCTCGCGCTC
TTCTACATGG CGGTGTATGC GCGCATGACG CGCGCCGCCA TGCTCGAGGT GGCGCAGATG
GACTTCGTGA AGACCGCGCG CGCCAAGGGC GTGAAGCCCG GCCGCATCCT GCGCGCGCAC
GTGCTGCGCA ACGCGCTGCT GCCGGTGGTC ACGCTCGCGG GCATCCAGGC CGGCGGAATG
ATCGGCGGCG CGGTGCTGAC CGAGACCGTG TTCGCCTGGC CCGGCATCGG CCGCCTGATG
TTCGACGCGC TGCTGCAGCG CGACTACAAC CTGCTGCTCG GCGCCTTCCT CGTGACCGCG
GCCATGGCCG TGCTGTTCAA CCTCATCACC GACCTCGTCT ACACGCTGGT CGATCCGCGG
ATCGAGCTAT GA
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| Protein sequence | MKRTQFMLGR VMQGLLAILL IATVNFMLVR AAPGDPVSVL AGEAGASDPQ FVAQLRAQFG
LDQPITTQLA TYVGKVVQLD LGFSYRQQQP VLKLIMDRLP ATLLLTGTAF ALSLLFGITL
GALAARRAGS WVDSSITVVA LIFYATPLYW LALMAVLVFT VQLDWLPGFG FSTVGSGATG
LALAWDIAGH LVLPALTLAL FYMAVYARMT RAAMLEVAQM DFVKTARAKG VKPGRILRAH
VLRNALLPVV TLAGIQAGGM IGGAVLTETV FAWPGIGRLM FDALLQRDYN LLLGAFLVTA
AMAVLFNLIT DLVYTLVDPR IEL
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