| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5232 |
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| Symbol | |
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| ID | 7969891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5553792 |
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| End bp | 5555450 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795826 |
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| Product | ABC transporter related |
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| Protein accession | YP_002947100 |
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| Protein GI | 239818190 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCA CCGTCACGCC CATGAAGCCG GTGCAGCCGG TGCTCGACGT CGTCAACCTC
GGCATCCGGC TGCCCAAGGG CGCGGACCGC GCGCTGGCTG TCGACGGCGC CACGCTGTCG
GTGCTGCCGG GCCAGACGCT GTGCGTGGTC GGCGAATCGG GCTCGGGCAA GTCGATGATC
GCCAATGCCG TGATGGGCCT GCTGCCGCGC CCGCATGTGG AGCCCGTGGC CGGGCAGATC
CTGTTCGAGG GCCGCGACCT GCTGCAGCTC AGCGAGCCGC AGCTGCGCGA GCTGCGCGGG
CGCCGCATCG GCATGGTGTT CCAGGAGCCG ATGACGGCGC TCAACCCCGT GATGCGCATC
GGCGAGCAGA TCGGCGAGGT CTTCGATGCG CACGGCAGCG TGCCCGCGGC CGAGAAGCGG
CGGCGCATCC TGGCCGCGCT GGCCGACGTG GGCCTGCCCG ACCCGGAACT GCTGATCGAC
GCCTATCCGT TCCGCCTCTC GGGCGGCCAG CGCCAGCGCG TGATGATCGC CTGCGCACTG
GTGCTCGAGC CCGTGCTCTT GATTGCCGAC GAGCCGACCA CCGCGCTCGA CGTGACGACG
CAGGCACAGA TCCTCGCGCT GATCCGCGAG CTGCAGCAGC GCCGCGGCAC GGCGGTGCTG
TTCATCACGC ACGACTTCGG CGTGGTGTCG GAGATTGCCG ACCACGTGGT GGTGATGCAG
ACCGGCCAGG TCGTCGAGGC CGGGCCGGTG CGCCAGGTGC TCGATGCGCC GCAGCACCCC
TACACGCGCA AGCTGATCGC CGCGATCCCC ACCGGCAACG CCGAGCGCGA CACGCCGACC
GGCGAGATCG TGCGCGTGCT GCAGGTGCAG GACCTGTGCA AGACCTACAG CTCGGGCAAC
GGCCTCTTCA AGCGCGGCCG CTCGGTGCAG GCCGCGAAGA ACGTCAGCTT CGAACTGCGC
CGCGGCGAGA CGCTGGGGCT GGTCGGCGAA TCGGGTTCGG GCAAGTCGAG CGTGGGCCGC
TGCCTGGTGG GGCTTTCGCC GTTCGACAGC GGCCGGATCC TGTTCAAGGG CCGCAGCCTG
TCGCAGGGGC CGGCGTTCCG GCGCGAGGCC GCCGGCAAGA TCCAGATGGT GTTCCAGGAC
CCGTACGCAT CGCTGAATCC GCGCCACCGC GTGGGTGCGG CCATTGCGGG CGGCCCCATT
GCGCAGGGCG TGAGCAAGGC CGAAGCCATC GCGCGCGCGA TGGAACTGCT GAAGCTCGTG
GGCCTGGGCG CCGACGCGGC CGAGCGCTAT CCGCACGAGT TCTCGGGCGG GCAGCGCCAG
CGCATCGGCA TCGCCCGCGC GCTGGCGATG CAGCCCGAAC TGCTGGTGGC CGACGAGCCG
GTGTCGGCGC TCGACGTGTC GGTGCAGGCG CAGGTGCTCG AGCTCTTCAC GCAGGTGCGC
GAGCAGTTCC AGCTTGCGAT GGTCTTCATC ACGCACGACC TGCGCGTGGC CGGCCAGATG
TGCGACCACA TCGCGGTGAT GCAGCGCGGC GAGGTCGTCG AATACGGCGA AACGCACAAG
GTGCTCGGCG ATCCGAAGCA CGCCTACACG CGCAAGCTGA TCGAGGCGGT GCCGCGGCTG
GTGTCCGCCG CGTCGCCGGC CGAGGCGCTG GTCGCGTGA
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| Protein sequence | MSATVTPMKP VQPVLDVVNL GIRLPKGADR ALAVDGATLS VLPGQTLCVV GESGSGKSMI
ANAVMGLLPR PHVEPVAGQI LFEGRDLLQL SEPQLRELRG RRIGMVFQEP MTALNPVMRI
GEQIGEVFDA HGSVPAAEKR RRILAALADV GLPDPELLID AYPFRLSGGQ RQRVMIACAL
VLEPVLLIAD EPTTALDVTT QAQILALIRE LQQRRGTAVL FITHDFGVVS EIADHVVVMQ
TGQVVEAGPV RQVLDAPQHP YTRKLIAAIP TGNAERDTPT GEIVRVLQVQ DLCKTYSSGN
GLFKRGRSVQ AAKNVSFELR RGETLGLVGE SGSGKSSVGR CLVGLSPFDS GRILFKGRSL
SQGPAFRREA AGKIQMVFQD PYASLNPRHR VGAAIAGGPI AQGVSKAEAI ARAMELLKLV
GLGADAAERY PHEFSGGQRQ RIGIARALAM QPELLVADEP VSALDVSVQA QVLELFTQVR
EQFQLAMVFI THDLRVAGQM CDHIAVMQRG EVVEYGETHK VLGDPKHAYT RKLIEAVPRL
VSAASPAEAL VA
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