| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5221 |
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| Symbol | |
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| ID | 7969880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5541429 |
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| End bp | 5542568 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795815 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002947089 |
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| Protein GI | 239818179 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.029602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTCCA AAGCACACAT GATTCCGTTT CTCGGCCTCG CGGCGGCCAT CGCCATGGCA
GGCCACGCGC ATGCGCAGCA GGAGCAGGTC GTCAAGATCG GCCACAGCGG GCCGCTCTCG
GGCCCCAATG CCTTCGCGGG CAAGGACAAC GAAAACGGCG TGCGCCTGGC CATCGAGGAA
CTCAACGCGA AGAAGATCAC GGCCGGCGGC AAGACGCTGA AGTTCGAGCT GGTGTCCGAA
GACGACCAGT GCGACGCCAA GTCCGGCGTC AGCGTGGCGC AGAAACTGGT GGACGACGGC
GTCAAGTACG TCATGGGCCC GTACTGCTCG GGCGTGGCCA TTCCGGCGTC GCGCATCTAT
GCCGAAGGCG GCACCATGGT CTCCACCGTG GGCACCAACC CGAAGGTCAC GCAGGGCGGC
TACAAGAACC TCTTTCGCAT CATCGCGAGC GACAACCAGA TCGGCTCCAG CATGGCGGTG
TATGCGGCCA AGGTGCTCAA GGTCAGCAAG GTGGGCGTGA TCGACGACCG CACCGCCTTC
GGCCAGGGCC TGGCGGAAGA GTTCAGCAAG GAAGCGAAGA AGCAGGGCCT CACCATCGTG
GGCCAGGAGT TCACCACCGA CAAGGCCGTG GACTTCACCG CGATCCTCAC CAACATGAAG
GCCAAGGCGC CCGAAGCCAT CTTCTTCGGC GGCTATGCAC CGCAGGCCGC ACCCATGGCG
CGCCAGATGA AGCAGCTCGC CGTGCCCGGC AAGCTGCTTG GCGGCGACAC CGTCTGCAGC
CCGGCCACCG GCAAGCTCGG CGGCGATGCG GTCAACGACC TGGTGTTCTG CGCGCAGGGC
GGCTCCATCC TTGAAAAGGC GCAGAGCGGC CCGGCCTTCA AGGCCAAGTT CAAGAAGCGC
TTCAACGCCG ACGCGGACGC CTACGCCGCC TCGTACTACG ACCAGCTGAT GTTCATCGGC
GAGTCGATGC AGAAGGCCAA CTCCATCGAC CCCGACAAGG TGGGCGCCGA GCTCTACAAG
ACCACCTACA AGGGCGTGGC CGCCACCTAC AGCTACGACG ACAAGGGCAA CATGAAGCAG
GCGCCGATCA CTGTCTTCAC GTTCAAGAAC GCCGCCCCCG TTCCGTTGGC CAGCTACTGA
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| Protein sequence | MKSKAHMIPF LGLAAAIAMA GHAHAQQEQV VKIGHSGPLS GPNAFAGKDN ENGVRLAIEE
LNAKKITAGG KTLKFELVSE DDQCDAKSGV SVAQKLVDDG VKYVMGPYCS GVAIPASRIY
AEGGTMVSTV GTNPKVTQGG YKNLFRIIAS DNQIGSSMAV YAAKVLKVSK VGVIDDRTAF
GQGLAEEFSK EAKKQGLTIV GQEFTTDKAV DFTAILTNMK AKAPEAIFFG GYAPQAAPMA
RQMKQLAVPG KLLGGDTVCS PATGKLGGDA VNDLVFCAQG GSILEKAQSG PAFKAKFKKR
FNADADAYAA SYYDQLMFIG ESMQKANSID PDKVGAELYK TTYKGVAATY SYDDKGNMKQ
APITVFTFKN AAPVPLASY
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