| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5212 |
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| Symbol | |
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| ID | 7969871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5534031 |
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| End bp | 5535461 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795806 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | YP_002947080 |
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| Protein GI | 239818170 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACAT CCCCTTCCAC AGCCGGCGGC CCGCCAGCCG GCAACGGTTT TGCCACGCTG
GCGCTCTCGC CCCAGATGCT GGCCAACCTC ACGCAGCTGG GCTACACGCA GATGACGGCG
ATCCAGGCGG CCGCGCTGCC GCCGGCGCTG CTCGGCAAGG ACCTGATCGC GCAGGCCAAG
ACCGGCAGCG GCAAGACCGC CGCCTTTGCG CTCGCGCTGC TCTCCAACCT GAACCCGCGC
CGCTTCGCCA TCCAGGCGAT GGTGCTGTGC CCCACGCGCG AACTGGCCGA CCAGGTCACG
ACCGAAATCC GCCGCCTGGC GCGCGCGGAA GAGAACATCA AGGTGGTCAC GCTCTGCGGC
GGCGTCGCGC TGCGCGGGCA AATTGCCAGC CTGGAGCACG GCGCGCACAT CGTGGTGGGT
ACGCCCGGCC GCATCATGGA CCACCTGGAG CGCGAGAACC TGAATCTCGA GGCGCTCAAC
ACGCTGGTGC TCGACGAAGC CGACCGCATG CTGGACATGG GCTTCTTCGA CGACATCGTC
AAGGTGGCGC GCCAGTGCCC CAAGGAGCGC CAGACGCTGC TGTTCTCGGC CACCTACCCC
GAAGGCATCG CCAAGCTCGC GCAGCAGTTC ATGAAGAACC CCGAGCAGAT CACGGTGCAG
GCGCAGCATG AAGGCAGCAA GATCCGCCAG CGCTGGTACC AGGTGAAGGA AAGCGAACGG
CTGCACGCCG TGAGCCTTTT GCTCGACCAT TTCCGCCCCG TGAGCACGCT GGCCTTCTGC
AACACCAAGC AGCAGTGCCG CGACCTCGTC GAGGTGCTGC AGGGCCAGGG CTTCAGCGCG
CTGGCCCTCT TCGGCGAGCT GGAGCAGCGC GAGCGCGACC AGGTGCTGGT GCAGTTTGCC
AACCGCAGCT GCTCCGTGCT GGTGGCCACC GACGTGGCGG CGCGCGGGCT CGACATTGCG
CAGCTCGAAG CCGTGATCAA CGTCGACGTG ACACCCGACG CCGAAATCCA CATCCACCGC
ATCGGCCGCA CCGGCCGCGT GGGCCAGCAG GGCGGCGCCG AGGGCCTCGC GCTGAACCTG
GCGAGCATGG ACGAGATGGG CAGCGTCGGC AAGATCGAGC AGCTGCAGGG CCGCGAATCC
GAATGGCACC CGCTGGCCGA GCTCACGCCG GCCCAGGGCG CGCCGCTCGC GCCGCCCATG
GCCACCTTGC AGATCGTGGG CGGGCGCAAG GAGAAGATCC GCGCCGGCGA CGTGCTGGGC
GCGCTCACCG GCGACTGCGG CTACGCCAAG GACCAGGTCG GCAAGATCAA CGTCAACGAG
TTCTCGACCT ACGTGGCCGT GGAGCGCGGC ATTGCGGCCG AAGCGGCGCG CAAGCTCTCG
AGCGGCCGCG TGAAAGGCAA GAGCGTGAAG GTGCGCCTGC TGGAGCTCTG A
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| Protein sequence | MTTSPSTAGG PPAGNGFATL ALSPQMLANL TQLGYTQMTA IQAAALPPAL LGKDLIAQAK
TGSGKTAAFA LALLSNLNPR RFAIQAMVLC PTRELADQVT TEIRRLARAE ENIKVVTLCG
GVALRGQIAS LEHGAHIVVG TPGRIMDHLE RENLNLEALN TLVLDEADRM LDMGFFDDIV
KVARQCPKER QTLLFSATYP EGIAKLAQQF MKNPEQITVQ AQHEGSKIRQ RWYQVKESER
LHAVSLLLDH FRPVSTLAFC NTKQQCRDLV EVLQGQGFSA LALFGELEQR ERDQVLVQFA
NRSCSVLVAT DVAARGLDIA QLEAVINVDV TPDAEIHIHR IGRTGRVGQQ GGAEGLALNL
ASMDEMGSVG KIEQLQGRES EWHPLAELTP AQGAPLAPPM ATLQIVGGRK EKIRAGDVLG
ALTGDCGYAK DQVGKINVNE FSTYVAVERG IAAEAARKLS SGRVKGKSVK VRLLEL
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