Gene Vapar_5205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5205 
Symbol 
ID7969864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5528765 
End bp5529730 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content68% 
IMG OID644795799 
Producthypothetical protein 
Protein accessionYP_002947073 
Protein GI239818163 
COG category[S] Function unknown 
COG ID[COG3181] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.419234 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACGTC GTCATCTTCT TTCTGCCCTG GCCGCTGTTT CTGTCGCGCC TGGAATATCC 
TTTGCTCAGC AAGGCAAGCC GATCCGCATG ATCGTGCCCT TCCCGCCCGG CGGCGCCACC
GACATCACGG CGCGCGTGCT GTCGGAGCCG CTGGCCAAGA TCCTCCAGCA GCCCGTGGTC
ATCGACAACC GCGCCGGCGC CGGCGGCTCC ATCGGCATGG CCGAGGTGGC CCGCTCCGCG
CCGGACGGCC TCGCCTTTGG CGTGGCCACG CTCTCCACGC ACGGCGTGAA CCCGGCCGTC
TACCAGAAGC TGCCTTATGA CCCGCTCAAG GGCTTCGTCG CCGTGACCGA GCTGGTGAAG
GCGCCCGGCG TGGTCGTCAT CAACCCGCGG GTGTTGCCGG TGCAGAGCTT CGCGGAACTC
GTGAAGTACC TGAAGGCCAA TCCGGGCAAG GTGTCGTACG CCTCGCCGGG CAACGGCACC
ATCGGCCACA TGTGGGGCGA ACTCTTCAAG AGCAGCACCG GAACCTCGAT GGTGCACATC
CCCTACCGCG GTGCGGGCCC GGCCATCAAC GACGTGCTCG CGGGCGAGGT GCCGGTGTAT
TTCGACCAGG TGGCCTCGTC GCTGCCGCAC GTGAAGGCGG GCAAGCTGAA GGCGCTGGCC
GTGTCCTGGA GCAGCCGGCT CGACGTGCTG CCCGAAGTGC CGACCTACCG CGCGCTCGGC
TACCCGGCCA ACAACGATCC GTCGTGGTTC GGCCTCGTGG CGCCCGCCGG CACGCCGGCC
GACATCGCGC TGCGCATGCA GCAGGCGGTG GCCACGGCGC TGAAGGACGC CACGGTGCGC
GAGCGCCTGG CGCTGCAGGG GCTGTACGCC TCGGGCACCA CGCCGGCCGA ATTTGCCAAG
CAGATCGACA GCGAGATCGA GAAGATGAAA AAAGTCGCCG CCTTCGCGCG CATCCGATTG
GACTGA
 
Protein sequence
MQRRHLLSAL AAVSVAPGIS FAQQGKPIRM IVPFPPGGAT DITARVLSEP LAKILQQPVV 
IDNRAGAGGS IGMAEVARSA PDGLAFGVAT LSTHGVNPAV YQKLPYDPLK GFVAVTELVK
APGVVVINPR VLPVQSFAEL VKYLKANPGK VSYASPGNGT IGHMWGELFK SSTGTSMVHI
PYRGAGPAIN DVLAGEVPVY FDQVASSLPH VKAGKLKALA VSWSSRLDVL PEVPTYRALG
YPANNDPSWF GLVAPAGTPA DIALRMQQAV ATALKDATVR ERLALQGLYA SGTTPAEFAK
QIDSEIEKMK KVAAFARIRL D