| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5200 |
|---|
| Symbol | |
|---|
| ID | 7969859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5522121 |
|---|
| End bp | 5522948 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644795794 |
|---|
| Product | biotin/acetyl-CoA-carboxylase ligase |
|---|
| Protein accession | YP_002947068 |
|---|
| Protein GI | 239818158 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
|---|
| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.105506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGTA CCCAGGCCGC CTGGCTCGAA GACCGGATCG CTGCGGCGGT GGCGCCGCTC
TTGCCCGGCT TCGCGGTCGA GGCGGTGGCC GAGATCGACT CCACCAATAC CGAACTGATG
CGCCGCGCGC GCGCCGGCCA GACCGCGCCG GTGCTGCTGG TGGCCGAGCG CCAGACGGCC
GGCCGCGGCC GCCTCGGCCG GCCCTGGCAG AGCGCGCAGC AGGGCGAAGA ACAAGGCGCC
GCCTCCCTCA CCTTCTCGCT CGGCCTGCCG CTCGCGCCGC GCGACTGGGC CGGCCTCTCG
CTGGCCGTGG GCGTGAGCGT GGCGGAAAGC CTCGATCCCA CGGGCGCGGC CAAGGTCGCG
CTCAAGTGGC CCAACGACCT GTGGGTGGAG GACCGCAAGC TGGCCGGCAT CCTGATCGAA
ACCGCCATGC CGCATGCGGG CCGCCCCGAT GCGCCGGCCC CGCCGCGCTA CCTGGTGATC
GGCATCGGCA TCAACATCGG CCCACGCGAG GGCGATGGCA TGCGCACCCC GCCGGCCTGG
CTGCGCCAGT GGCGCCCCGA TGCCACCGCG CCCCAGGTGC TGGCCGAGCT GGCCGCGCCG
CTGGTGCGCA GCGTGCAGGC CTTCGAGGCC GAGGGCTTCG GGCCGTTTGC CGAACGCTTT
GCCGCGCGCG ACGCCTTGCG CGGGCGGCAA GTCCAGCTCA GCGACGGCAG CTTCGGCCTG
TGCGAGGGCG TGGCCTGGGG CGGCGAGCTC CAGGTGCGCA CCGCCGGCGG GCTGCAGCTG
GTCTCGAGCG ACGAAGTCAG CGTGCGCCCG AGCGGCATGG CGTTCTGA
|
|---|
| Protein sequence | MMGTQAAWLE DRIAAAVAPL LPGFAVEAVA EIDSTNTELM RRARAGQTAP VLLVAERQTA
GRGRLGRPWQ SAQQGEEQGA ASLTFSLGLP LAPRDWAGLS LAVGVSVAES LDPTGAAKVA
LKWPNDLWVE DRKLAGILIE TAMPHAGRPD APAPPRYLVI GIGINIGPRE GDGMRTPPAW
LRQWRPDATA PQVLAELAAP LVRSVQAFEA EGFGPFAERF AARDALRGRQ VQLSDGSFGL
CEGVAWGGEL QVRTAGGLQL VSSDEVSVRP SGMAF
|
|---|
| |