| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5197 |
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| Symbol | |
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| ID | 7969856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5519735 |
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| End bp | 5520406 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795791 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002947065 |
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| Protein GI | 239818155 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.47869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGATTC TGATTGCGGA AGACGACCAG GTGCTGGCCG ATGCCCTGCT GCGCAGCCTG
CGCACCTCGG GCGCGGCGGT CGACCACGTG GCGAACGGAT CGCAGGCCGA CACCGCGCTC
ATGACGCACA GCGAGTTCGA CCTGCTGATC CTCGACCTGG GGCTGCCCAA CCTGCACGGC
ATCGAGATCC TGAAGCGGCT GCGCGCACGC GGCTCGCAGC TGCCGGTGCT GGTGCTCACC
GCGGCCGACA GCGTGGAGGA GCGCGTCAAG GGCCTGGACC ACGGCGCCGA CGACTACATG
GCCAAGCCCT TCAGCCTGCA GGAGCTCGAG GCGCGCGTGC GGGCGCTCAC GCGGCGCGGC
ATGGGCGCCA CCAGCAACAC GATCCGCCAC GGCCCGCTGG TGTACGACCA GGCCGGCCGG
GTGGCCACCA TCGACGGCAA GATGGTCGAG CTCTCGGCGC GCGAACTGGG CCTGCTGGAG
GTGCTGCTGC AGCGCGCCGG CCGCCTGGTC AGCAAGGACC AGCTGGTGGA GCGCCTGTGC
GAATGGGGCG AGGAAGTGAG CCTGAACGCG ATCGAGGTCT ACATCCACCG GCTGCGCAAG
AAGATCGAGA AAGGCCCGGT GCGCATTGCA ACGGTCCGAG GCCTCGGCTA CTGCCTCGAG
AAGATTCCTT GA
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| Protein sequence | MRILIAEDDQ VLADALLRSL RTSGAAVDHV ANGSQADTAL MTHSEFDLLI LDLGLPNLHG
IEILKRLRAR GSQLPVLVLT AADSVEERVK GLDHGADDYM AKPFSLQELE ARVRALTRRG
MGATSNTIRH GPLVYDQAGR VATIDGKMVE LSARELGLLE VLLQRAGRLV SKDQLVERLC
EWGEEVSLNA IEVYIHRLRK KIEKGPVRIA TVRGLGYCLE KIP
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