Gene Vapar_5196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5196 
Symbol 
ID7969855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5519184 
End bp5519669 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content72% 
IMG OID644795790 
Producttranscriptional regulator, MarR family 
Protein accessionYP_002947064 
Protein GI239818154 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.416383 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGAAT CCGCTTTTCC GACCGACTCG GACGCTTGGC GGCAGACCCA CCTGGGCCGC 
CTGCTGGGCC ATGCAATGCG CCGCTTCGAC GAGCGCGTGC TCGAACTCAT GGCGCATGAC 
GTGAACGTGC CGCTGGCGCT GTCGAACCTT GCGGCGCGCG CGCAGGTGAG CGCCGCGCAC 
ATCCACATCA CGCGGCACCT GGCGCGCGAG GGCTCGCGCC TGACCGAACT CGCGCAGCGC 
GCCGGCATGA CCAAGCAGGC GATGGGCGCG CTGGTGGACC AGTGCGAGGC CTGGGGCCTG 
GTCACGCGCG GGCCCGATCC GCTCGATGCG CGGGCGCGGC GCGTGCTCTT CACCACCGAC 
GGCCTGGCCT GGCTCGACGC CTTCCGCGGC GCGGTGACGC AGGCCGAGCG CGAGTTCCGC 
GCGAGCGTGG GCAACGACAT TGCCACCGTG GTAACCATCG GACTCGAGGC CTACACGGCG 
GGCTAG
 
Protein sequence
MAESAFPTDS DAWRQTHLGR LLGHAMRRFD ERVLELMAHD VNVPLALSNL AARAQVSAAH 
IHITRHLARE GSRLTELAQR AGMTKQAMGA LVDQCEAWGL VTRGPDPLDA RARRVLFTTD 
GLAWLDAFRG AVTQAEREFR ASVGNDIATV VTIGLEAYTA G